Gene Sala_1394 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSala_1394 
Symbol 
ID4081750 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingopyxis alaskensis RB2256 
KingdomBacteria 
Replicon accessionNC_008048 
Strand
Start bp1449079 
End bp1450170 
Gene Length1092 bp 
Protein Length363 aa 
Translation table11 
GC content66% 
IMG OID638009760 
Productdiguanylate cyclase 
Protein accessionYP_616441 
Protein GI103486880 
COG category[T] Signal transduction mechanisms 
COG ID[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.0382042 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGTTGGC TGGGGCTCCG CCGCGCGCGC GGGACTGCCT CCGATGGCGG ATATCCGCCC 
CCCGACCCTG GAGGCCCGCG CGACCTGGCG CGCGAGGCAC GCTATGAACT CGCCGCATCG
ATCACCTCTT TCCTCGTCGA CAACGACCTC GAAGTCTCGC CGACGAACCT GCTCATCGCG
CACGGTGCCT TTTCGGGATG CAACCCCCGG CTCGCGCAGT TGATCGTCGC GCGCGCGCAA
AGTCCGCAGG GCATCACCCA GAAATGGCTC GACGAACTGG AAGAACAGGA AAGCGGACAG
CCCGACCGCG CTGAACTCGA CAAGCTGATG ACGCGGCTCG AGGCGAACCT CGACGCCTTT
CATGCCAATA CGAAGCAAGC GCGTTCCGCC ACGAGCGATT ACGGGGTCGA GCTCGAACAA
CATGTCTCCG ACCTCGAACA GCTTCAGAAA ACGGGCCGCA TCGTCTCCAG CCTCGCCGAC
CTCGCCAAGG TCATGCTCGA ACGCACGCGC AAGGCCGAAG AGGATATGCG CAAGAGCGAG
GATGAGGCGA AAGCGCTGCG CCGCAGTCTC GACCGCGCCA GGCGCGACGC CGAACTCGAC
TATCTGACCG GCCTGCCCAA CCGCCGCGCA TTCGAAAATC TGCTCGACCG GCATTACAGG
GAAGCGCGCG CCGCGCTCGA GCCGCTGAGC GTCGCCTTCT GCGACATCGA CGAGTTCAAG
AAGGTCAACG ACACGCACGG CCATGACGCC GGCGACCGCG TCATCAAGGC GATCGCCGAT
ACGCTCGCGC GCATCTCCGA CGACAAATGC CACGTTGCCC GCCATGGCGG CGAGGAGTTC
GTGATGCTGT TCCGCGGCCT GACGCCGACC GAGGCCGCGC AAAAGCTCGA CGATGCACGC
GAGGCACTCG CCGACCGGCG GCTTATCAAC CGCAAGACCG ACGAGCCCTT CGGTCAGATC
ACCTTTTCGG GCGGCGTGGC CGATGTCTTC GGCTATGGCG ATGCGCGCGC CGCGCTGAAG
GCCGCCGACG CGGCGCTTTA CAAGGCCAAG ACGAGCGGCC GCAATTGCAT CCGCATCGCC
GATCCGGCCT GA
 
Protein sequence
MGWLGLRRAR GTASDGGYPP PDPGGPRDLA REARYELAAS ITSFLVDNDL EVSPTNLLIA 
HGAFSGCNPR LAQLIVARAQ SPQGITQKWL DELEEQESGQ PDRAELDKLM TRLEANLDAF
HANTKQARSA TSDYGVELEQ HVSDLEQLQK TGRIVSSLAD LAKVMLERTR KAEEDMRKSE
DEAKALRRSL DRARRDAELD YLTGLPNRRA FENLLDRHYR EARAALEPLS VAFCDIDEFK
KVNDTHGHDA GDRVIKAIAD TLARISDDKC HVARHGGEEF VMLFRGLTPT EAAQKLDDAR
EALADRRLIN RKTDEPFGQI TFSGGVADVF GYGDARAALK AADAALYKAK TSGRNCIRIA
DPA