Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sala_1394 |
Symbol | |
ID | 4081750 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingopyxis alaskensis RB2256 |
Kingdom | Bacteria |
Replicon accession | NC_008048 |
Strand | + |
Start bp | 1449079 |
End bp | 1450170 |
Gene Length | 1092 bp |
Protein Length | 363 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 638009760 |
Product | diguanylate cyclase |
Protein accession | YP_616441 |
Protein GI | 103486880 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.0382042 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGGTTGGC TGGGGCTCCG CCGCGCGCGC GGGACTGCCT CCGATGGCGG ATATCCGCCC CCCGACCCTG GAGGCCCGCG CGACCTGGCG CGCGAGGCAC GCTATGAACT CGCCGCATCG ATCACCTCTT TCCTCGTCGA CAACGACCTC GAAGTCTCGC CGACGAACCT GCTCATCGCG CACGGTGCCT TTTCGGGATG CAACCCCCGG CTCGCGCAGT TGATCGTCGC GCGCGCGCAA AGTCCGCAGG GCATCACCCA GAAATGGCTC GACGAACTGG AAGAACAGGA AAGCGGACAG CCCGACCGCG CTGAACTCGA CAAGCTGATG ACGCGGCTCG AGGCGAACCT CGACGCCTTT CATGCCAATA CGAAGCAAGC GCGTTCCGCC ACGAGCGATT ACGGGGTCGA GCTCGAACAA CATGTCTCCG ACCTCGAACA GCTTCAGAAA ACGGGCCGCA TCGTCTCCAG CCTCGCCGAC CTCGCCAAGG TCATGCTCGA ACGCACGCGC AAGGCCGAAG AGGATATGCG CAAGAGCGAG GATGAGGCGA AAGCGCTGCG CCGCAGTCTC GACCGCGCCA GGCGCGACGC CGAACTCGAC TATCTGACCG GCCTGCCCAA CCGCCGCGCA TTCGAAAATC TGCTCGACCG GCATTACAGG GAAGCGCGCG CCGCGCTCGA GCCGCTGAGC GTCGCCTTCT GCGACATCGA CGAGTTCAAG AAGGTCAACG ACACGCACGG CCATGACGCC GGCGACCGCG TCATCAAGGC GATCGCCGAT ACGCTCGCGC GCATCTCCGA CGACAAATGC CACGTTGCCC GCCATGGCGG CGAGGAGTTC GTGATGCTGT TCCGCGGCCT GACGCCGACC GAGGCCGCGC AAAAGCTCGA CGATGCACGC GAGGCACTCG CCGACCGGCG GCTTATCAAC CGCAAGACCG ACGAGCCCTT CGGTCAGATC ACCTTTTCGG GCGGCGTGGC CGATGTCTTC GGCTATGGCG ATGCGCGCGC CGCGCTGAAG GCCGCCGACG CGGCGCTTTA CAAGGCCAAG ACGAGCGGCC GCAATTGCAT CCGCATCGCC GATCCGGCCT GA
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Protein sequence | MGWLGLRRAR GTASDGGYPP PDPGGPRDLA REARYELAAS ITSFLVDNDL EVSPTNLLIA HGAFSGCNPR LAQLIVARAQ SPQGITQKWL DELEEQESGQ PDRAELDKLM TRLEANLDAF HANTKQARSA TSDYGVELEQ HVSDLEQLQK TGRIVSSLAD LAKVMLERTR KAEEDMRKSE DEAKALRRSL DRARRDAELD YLTGLPNRRA FENLLDRHYR EARAALEPLS VAFCDIDEFK KVNDTHGHDA GDRVIKAIAD TLARISDDKC HVARHGGEEF VMLFRGLTPT EAAQKLDDAR EALADRRLIN RKTDEPFGQI TFSGGVADVF GYGDARAALK AADAALYKAK TSGRNCIRIA DPA
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