| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_1350 |
|---|
| Symbol | |
|---|
| ID | 4082818 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | + |
|---|
| Start bp | 1409413 |
|---|
| End bp | 1410066 |
|---|
| Gene Length | 654 bp |
|---|
| Protein Length | 217 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 638009716 |
|---|
| Product | lipoate-protein ligase B |
|---|
| Protein accession | YP_616397 |
|---|
| Protein GI | 103486836 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0321] Lipoate-protein ligase B |
|---|
| TIGRFAM ID | [TIGR00214] lipoate-protein ligase B |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.619841 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0278741 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCTTCGC TTCCCGTGCC CCAATGGATC GTCAGCCCCG GTCTCACCGA TTATGCCGCG
GCGCTCGCCG ACATGGAGTC GCGCGCCGCC GCGATACATG CGGACGAAGC GGGCGAACGC
ATCTGGCTCC TCGAACACCC CCCGCTCTAT ACCGCGGGAA CGAGCGCCGA TCCCGCCGAA
CTGCTCGACC CGCGCTTTCC GGTTTACGAT GCTGGCCGCG GCGGGCGTTA TACCTATCAT
GGTCCGGGTC AGCGCGTCGG CTATGTCCAG CTCGACCTGA CGCGGCGCGG GCGCGACGTG
CGCGCCTATG TCCATGCGCT CGAAGGCTGG GTGATCGATG CGCTCGCGCT GCTCGGCGTC
AAGGCGCGGC GCGCCGAGGG ACGCATCGGC ATCTGGACCG ACGACGTACG GGGACGCGAG
GCGAAGATCG GCGCGATCGG GGTGCGCGTC AAACGCTGGG TGACGCTGCA CGGCTTTTCG
CTGAACGTCG CGCCCGACCT GACCCATTTC ACGGGTATCG TGCCATGCGG CATCGCCGAA
TATCCCGTCA CGAGCCTCGC CGCGCTAGGG AAGGCGACGG GTTTTTCCGA GGTCGATGCT
GCGCTTGCCC GGACGCTCCC CGCTTTTCTC GACAAGCTGC GGCCAAGCGA TTAG
|
|---|
| Protein sequence | MPSLPVPQWI VSPGLTDYAA ALADMESRAA AIHADEAGER IWLLEHPPLY TAGTSADPAE
LLDPRFPVYD AGRGGRYTYH GPGQRVGYVQ LDLTRRGRDV RAYVHALEGW VIDALALLGV
KARRAEGRIG IWTDDVRGRE AKIGAIGVRV KRWVTLHGFS LNVAPDLTHF TGIVPCGIAE
YPVTSLAALG KATGFSEVDA ALARTLPAFL DKLRPSD
|
|---|
| |