| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_1306 |
|---|
| Symbol | |
|---|
| ID | 4082230 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | - |
|---|
| Start bp | 1366845 |
|---|
| End bp | 1367513 |
|---|
| Gene Length | 669 bp |
|---|
| Protein Length | 222 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 638009668 |
|---|
| Product | NADH-quinone oxidoreductase, E subunit |
|---|
| Protein accession | YP_616353 |
|---|
| Protein GI | 103486792 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1905] NADH:ubiquinone oxidoreductase 24 kD subunit |
|---|
| TIGRFAM ID | [TIGR01958] NADH-quinone oxidoreductase, E subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.199425 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.728232 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGACG CACCCCAAAT CCCTGACGAA GCCGAAACCC GCGCGCGGTG GGGCGCTTTT
GCGTGGACGG CGGAAAATGC CGAAAAGGCG AAGGCGGTTA TCGCGCGCTA TCCCGCGGGG
CGCCAGCGTT CGGCGGTGAT GCCTTTGCTC GACCTTGCGC AGCGCCAGGT CGGCGCCGAG
ACGCAGACGC AGGGCTGGCT GCCCGTGCCG GTGATCGAAT ATGTCGCGGC CCAGCTCGAT
ATGCCGTTCA TCCGCGCCTA TGAGGTCGCG ACCTTCTATA CCATGTATAA TCTGGCGCCG
GTCGGCCGCT ATCATGTGCA GGTGTGCGGA ACGACACCGT GCCTGCTGCG CGGGTCGGAC
GATGTGACGG CGGCGTGCAA GAACCGCGGC ATGGTGAAGG GCAAGACGAC GCCGGACGGG
CTGTTCACCT TGAGCGAGGT CGAGTGCATG GGCACCTGCG CCAACGCGCC GATGGTCCAG
ATCAACGACG ATAATTACGA AGACCTCGAC TACGACAGCA TGACGCGGAT CCTCGACGAG
CTTGCCGCGG GCAAACAGCC CAAGACCGGC ACGCAGAACC CGCGGCGCCA CACGAGCGAG
CCTGAGGGCG GGCCGACGAC GCTGAAGGAA ATGGTCGAGG CCAATCATGA CTATCGGAAG
GAGTGGTGA
|
|---|
| Protein sequence | MADAPQIPDE AETRARWGAF AWTAENAEKA KAVIARYPAG RQRSAVMPLL DLAQRQVGAE
TQTQGWLPVP VIEYVAAQLD MPFIRAYEVA TFYTMYNLAP VGRYHVQVCG TTPCLLRGSD
DVTAACKNRG MVKGKTTPDG LFTLSEVECM GTCANAPMVQ INDDNYEDLD YDSMTRILDE
LAAGKQPKTG TQNPRRHTSE PEGGPTTLKE MVEANHDYRK EW
|
|---|
| |