Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sala_1275 |
Symbol | |
ID | 4082526 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingopyxis alaskensis RB2256 |
Kingdom | Bacteria |
Replicon accession | NC_008048 |
Strand | - |
Start bp | 1332420 |
End bp | 1333838 |
Gene Length | 1419 bp |
Protein Length | 472 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 638009635 |
Product | two component, sigma54 specific, Fis family transcriptional regulator |
Protein accession | YP_616322 |
Protein GI | 103486761 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
TIGRFAM ID | [TIGR01818] nitrogen regulation protein NR(I) |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.0891685 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCGAAG GCAAGACGAT CCTGCTGGTC GAGGACGATC CGGCGATCGC GATGGTCATC CGCGAAACGC TCGACGGCGA ATGCGGCCTT CTCGCGTCGG TCGGCAGCAT CGCCGAACGC AACGCCTGGC TCGCCGCTCA CCGCGCCGAC CTCATCATCA CCGATGTTGT CCTGCCCGAT GGCGACGGCA TCGACTCGCT GGTCCATGCC GGAGTCGATC CTGCAACGCC GGTGATCGTG CTGTCGGCCC AGAATACGCT CGACACCGCG GTCCGGGCGA CGGGCATCGG CAGCTATGAT TATCTGCCCA AGCCCTTCGA CCTCGACGAA CTGACCGCCA GCGTCCGCGC CGCGCTGCAA CGCCGCGTCG AGGCAGCCGC GAGCGACGCC CCGCCGCCTG CCGACAGCCA CGGCCTCGTC GGCCGCGCGC CGGCGATGCA GGCGGTTTAC CGGACGATCG CCCGGCTCGC GACGAACGAT CTCGCGGTGC TGATCCTCGG CGAGTCGGGG ACAGGCAAGG AGGTCGTTGC GCGCGCGATT CACGCCACCG GGCTGCGCCG CGACGGCCCC TTCGTCGCGA TCAACATGGC GGCCATCCCG CGCGAACTGA TCGAGGCCGA ACTGTTCGGT CATGAAAAGG GCGCCTTTAC GGGCGCGCAC AGCCGCAATG CTGGCCGCTT CGAACAGGCG GCGGGCGGAA CCTTGTTCCT CGACGAGATC GGTGACATGC CCCTGGAGGC GCAGACGCGG CTATTGCGCG TGCTGCAAAG CAACGAGTAT TCGACCGTCG GCGGCAGCCA GGCGCTCCGC GCCGATGTGC GCGTGATCGC CGCGACGCAC CGCGACATGC GCACGCTCGT CGCCGACGGT CGCTTTCGCG AAGATCTCTT TTACCGGCTC AACGTCATCC CTGTGACCTT GCCGCCGCTG CGCGACCGCC GCAGCGACAT TGCTGCGCTC GTTCGCCATT TTGTCGAGGT CGGGCGCGGA TCGGGGCTTC CCGACCGGCA GTTCGCGCCC GAAGCGATGC AATGGCTCGA ACGCCACGAC TGGCCGGGTA ATGTCCGTGA GCTGGGCAAT GTGGTGCAGC GACTCGCGGT GCTGTCGCGC GATACCGTCG TCACCGCACG CGAGGTCGAG ATGGTGCTGC GCGACAATGA CGAAAGCGGC GGCGTGGCCG ATCCCGCGGC ACTGATCGCG CGCGCCGTCG ACGACTGGGC GCGCGAAAAG ATGGCGAGCG CCGAACCCGA CGGCGGGATT CACGGCCAGC TCGAGGCGAT CGTCGAGGCC GCACTGTTCC GCCGCGTGCT GCGCGATGTG CGCGGCAACC AGCTGGAGGC GGCGCGGCGT CTCGGCATCA ACCGTAACAC GCTGCGCAAG CGCCTCGCTC AGCTGGAAAT CGATCCGCTG CATCCCTGA
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Protein sequence | MSEGKTILLV EDDPAIAMVI RETLDGECGL LASVGSIAER NAWLAAHRAD LIITDVVLPD GDGIDSLVHA GVDPATPVIV LSAQNTLDTA VRATGIGSYD YLPKPFDLDE LTASVRAALQ RRVEAAASDA PPPADSHGLV GRAPAMQAVY RTIARLATND LAVLILGESG TGKEVVARAI HATGLRRDGP FVAINMAAIP RELIEAELFG HEKGAFTGAH SRNAGRFEQA AGGTLFLDEI GDMPLEAQTR LLRVLQSNEY STVGGSQALR ADVRVIAATH RDMRTLVADG RFREDLFYRL NVIPVTLPPL RDRRSDIAAL VRHFVEVGRG SGLPDRQFAP EAMQWLERHD WPGNVRELGN VVQRLAVLSR DTVVTAREVE MVLRDNDESG GVADPAALIA RAVDDWAREK MASAEPDGGI HGQLEAIVEA ALFRRVLRDV RGNQLEAARR LGINRNTLRK RLAQLEIDPL HP
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