| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_1267 |
|---|
| Symbol | |
|---|
| ID | 4080282 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | + |
|---|
| Start bp | 1321931 |
|---|
| End bp | 1322275 |
|---|
| Gene Length | 345 bp |
|---|
| Protein Length | 114 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 638009627 |
|---|
| Product | nitrite reductase (NAD(P)H) large subunit, NirD |
|---|
| Protein accession | YP_616314 |
|---|
| Protein GI | 103486753 |
|---|
| COG category | [P] Inorganic ion transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG2146] Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases |
|---|
| TIGRFAM ID | [TIGR02378] nitrite reductase [NAD(P)H], small subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCACCA CCGCAGACTG GCTCGACATC GGCTGGGTCG ACCAGATTCC GGTGCGCGGC
AGTCGCACCG TGCAGGTCGC GGGCGGCGAC GATATCGCGG TGTTTCGCAC CGCAGAGGGC
AAGGTCTTCG CCCTCCTCGA CCGCTGCCCG CACAAGCATG GTCGACTGAG CCAGGGCATC
GTCCATGGCG GCGCGGTCGC CTGTCCGCTG CACAACTGGC GGATCAGCCT GTCGACCGGC
GAGGCGCTGG GCGACGACCA GGGCTGCACG CCGACGGTTC CGGTCAAGAT CGACGGCGGC
CGCGTCCTAA TCTGCCGCGC CAGCACGCTG AAGGCGGCGG CGTGA
|
|---|
| Protein sequence | MTTTADWLDI GWVDQIPVRG SRTVQVAGGD DIAVFRTAEG KVFALLDRCP HKHGRLSQGI
VHGGAVACPL HNWRISLSTG EALGDDQGCT PTVPVKIDGG RVLICRASTL KAAA
|
|---|
| |