Gene Sala_1232 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSala_1232 
Symbol 
ID4080456 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingopyxis alaskensis RB2256 
KingdomBacteria 
Replicon accessionNC_008048 
Strand
Start bp1281819 
End bp1282604 
Gene Length786 bp 
Protein Length261 aa 
Translation table11 
GC content66% 
IMG OID638009592 
ProductXRE family transcriptional regulator 
Protein accessionYP_616280 
Protein GI103486719 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.124507 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCCCCG CACCCGTCGG CGAACAGCTT CGCGAATGGC GCGTCCGTCG CCGGATGAGC 
CAGATGGATC TCGCGCTCGA AAGCGAGATT TCGACCCGGC ACCTGAGCTT TATCGAGACG
GGGCGCTCGC GGCCGAGCGC GCTGATGCTG CAACGCATCG CCGATTGCCT GGAGGTGCCT
AACCGCGCGC GCAACGCGAT GCTTCTGGCG GCGGGCTATG CCCCCGATTA TCGCGAACGC
GACCTGAACA GCCCCGAAAT GGCGGGGATG AAGGCGATCG TCGACCATGT GCTGAAGGGT
CACGAGCCCT ATCCCGCGCT CGCGGTCGAC CGGCACTGGA ACATGATCGC CGCCAATGAT
GCCGTCGCGC TGCTCACGCG GCTCGCGGCG CCCGAATTGC TCGCGCCGCC GGTCAATGTG
CTCCGCGTCG CGCTGCACCC CGACGGGCTC GCGCGGCATA TCGTCAACCT TGGCGAATGG
CGCGCGCACC TGCTCGAGCG GCTCGATCAC CAGATCGACG CGAGCGCCGA TGCGGGGCTG
ATCGCGCTGC GCAGCGAACT TGCGGGTTAT GGTGGGAGCA CGGGCGAGCA TGAGGGTAAC
GCAGCAAACG GCATCGCGGT GCCGCTGATC CTCGACACCC CGCTGGGACA GATCCGCTTC
GTCTCGACCG TGACGATCTT TGGCACGCCG GTCGACATCA CCCTCTCCGA ACTCGCGATC
GAGGCTTTTT TCCCGGCGGA TGCGGAGAGT GCGGCGCTGT TGCAGAAAAT GGCTGGGAAT
GCATAA
 
Protein sequence
MTPAPVGEQL REWRVRRRMS QMDLALESEI STRHLSFIET GRSRPSALML QRIADCLEVP 
NRARNAMLLA AGYAPDYRER DLNSPEMAGM KAIVDHVLKG HEPYPALAVD RHWNMIAAND
AVALLTRLAA PELLAPPVNV LRVALHPDGL ARHIVNLGEW RAHLLERLDH QIDASADAGL
IALRSELAGY GGSTGEHEGN AANGIAVPLI LDTPLGQIRF VSTVTIFGTP VDITLSELAI
EAFFPADAES AALLQKMAGN A