| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_1231 |
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| Symbol | |
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| ID | 4080455 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingopyxis alaskensis RB2256 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008048 |
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| Strand | + |
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| Start bp | 1279381 |
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| End bp | 1281681 |
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| Gene Length | 2301 bp |
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| Protein Length | 766 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 638009591 |
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| Product | ribonuclease R |
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| Protein accession | YP_616279 |
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| Protein GI | 103486718 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.982448 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGGCGAAAC GGCAACAGCC TGCTGGTCTT CCCAGCCCGG AACAGATCCT GCGTTTCATC
GAAGAAAGCA GGGACGCGGT CGGCAAGCGC GAGATCGCGA GACATTTCGG CCTGCGCGGC
GCCGACAAGA TTGCGCTCAA GGCGCTGCTC AAGGACATGA CCGATGAGGG GCTGGTCGAC
CTGGCGCCCG GACGCGCCTT CCACAAGCAT GGCGGGCTGC CCAAGGTAAT GGTTCTGCGG
GTTGCGGCGG TCGAGGGCGA TGTCGTCTGG GCGGTCCCCG ACCGCTGGGA GGGGGCCGGG
GCGCCGCCGC GCCTTCGGAT CATGGAAAAA GGGCGCAAGG GCGCGCTTGG ACTCGGCGAC
CGCATCCTCG CGCGCACCGA GGAACGCGGC AGCGGCCATG TCGCGCACCC GATGAAAAAA
TTGCAGGCGG GCGGCGAGAC GATCATCGGC GTGCTCGTGA CCGATACCGG CCCCGGCGGC
AAGCCGGTGA CCTGGCTGCG CCCTGCCGAC AAGCGCGCGC GGTTCGACTT CGCGGTGGCG
GACATGGGCG ACGCGGCGAT CGGCGACCTG GTGCGCGCCG AGCTGTCGGG GCGCGGTCCG
GCGACGAGGG CGCGCGTGAT CGACCGCATC GGTGATCCCT TTGCGCCGCG CTCGCTCAGC
ATGATCGCGA TCGCGAAGCA TGAGATCCCG CACATCTTCG GCGACGAGGT GATCGACGAG
GCCGAGCGCG CGGCAAAATT GCCGCTCACC ACCGACGGGC GCGAGGATCT GCGCGACCTG
CCGATCCTTG CGATCGACCC CGCCGACGCG CGCGACCATG ACGACGCTGT GTGGGCGGTC
CCCGACGACG ATCCCGGCAA CAAGGGCGGT TTCCGCGCCA TCGTCGCGAT CGCCGACGTC
AGCTATTATG TCCGTCCCGA CGGCGCGCTT GACCGCGAGG CGCGGCGGCG CGGCAACAGC
GTCTATTTCC CCGACCGGGT CGTGCCGATG CTGCCCGAAA CGCTGTCGGC GGGCGTCTGC
TCGCTCAAAG CGGGGCAGGA TCGCGCCGCG ATGGCATGTC ATCTGGTGAT CGACAAGCAT
GGCAAGGTGA CGTCATGGCG CTTCACGCGC GCGCTGGTGC GACTGCGCGC GAACATTGCC
TATGAGCGCG CGCAGACGGC CTATGACGCC GGCGCGCCCG ACGCGGGATG GGACGACGAT
GTGCTGTCGG CGCTCCGCCA TCTTTGGGCC TGCTGGACGC TGCTCGCCAA GGCGCGCGCG
GCGCGGGCGC CGCTCGACCT CGACCTGCCC GAACGGCAGG TGATCCTCGA CGAACAGGGC
GGCATCGCTG AAATCCGCGT GCGCGAACGG CTCGACGCGC ACCGGCTGAT CGAGGATTAT
ATGATCGCGG CGAATGTCGC GGCGGCCAAG GCGCTCGAAG CGAAAAAATC GCCCGTCATG
TACCGCATCC ACGAACCGCC GAGCCGCGAG AAGCTCGTCA GCCTCAAGGA TTATCTGGAG
ACGTTCGAGC AGGGCTTTGC GCTGGGGCAG GTCATTACGC CCGCGGTGTT CAACCGGCTG
ATCGATGGTT TTTCAGGCGA CGACCGCTTG CCCGAAATCA TGGAGGCGAT TTTGCGCAGC
CAGACGCAGG CCTATTACGG CCCCGCCAAT GCGGGGCATT TCGGGCTGGC GCTCGGCTCC
TATGCGCATT TCACTTCACC GATCCGCCGC TATGCCGATT TGATCGTTCA CCGTGCGCTG
GTCGATTCAT ACCGGCTCGA AGTGCCGGGC AAGCCGAAAG GCCTGCCCGC GAAGACCGGG
CTGGGCGAGG CCGATGCCAA GGGCCTTTCG CGCATCGGCG AGGCGATCAG CGCGCTCGAA
CGCCGCGCAA TGGAGGCCGA GCGCGAAACG GTCGACCGCT ATGTCGCCGC CTATCTCGCG
GGCAAGGTCG GCGAGATCGT CGCCGCGCGG ATCACCGGGG TGCAGCCGTT CGGATTCTTT
GCTACGGTCG ACGGGCTGGG CGGCGACGGG TTGGTGCCCG TCTCGACCCT GGGCAGCGAG
CGTTTCTTTT ATGACGAGGC GGCGCGGACG CTCGACAGCG AACATGGCCG CGTCAGTTTT
TCGGTCGGTC AGCGGCTCGA CCTCAGGCTG GTGGACGCCA ATCCGGTCAG CGGCGCGCTC
CGCTTTGAAT TGCCCGATGC GCCCGAAGGC GGATACCGGA ACCGCCCGCC GCGGCGCGAC
GGGGTGAAGA AAGCGGGCAA GCCTATGGTC GGCAAACGCG GGCGGCCTGC GAACATCAAG
CATAAGGGGC GGAAGCGTTG A
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| Protein sequence | MAKRQQPAGL PSPEQILRFI EESRDAVGKR EIARHFGLRG ADKIALKALL KDMTDEGLVD
LAPGRAFHKH GGLPKVMVLR VAAVEGDVVW AVPDRWEGAG APPRLRIMEK GRKGALGLGD
RILARTEERG SGHVAHPMKK LQAGGETIIG VLVTDTGPGG KPVTWLRPAD KRARFDFAVA
DMGDAAIGDL VRAELSGRGP ATRARVIDRI GDPFAPRSLS MIAIAKHEIP HIFGDEVIDE
AERAAKLPLT TDGREDLRDL PILAIDPADA RDHDDAVWAV PDDDPGNKGG FRAIVAIADV
SYYVRPDGAL DREARRRGNS VYFPDRVVPM LPETLSAGVC SLKAGQDRAA MACHLVIDKH
GKVTSWRFTR ALVRLRANIA YERAQTAYDA GAPDAGWDDD VLSALRHLWA CWTLLAKARA
ARAPLDLDLP ERQVILDEQG GIAEIRVRER LDAHRLIEDY MIAANVAAAK ALEAKKSPVM
YRIHEPPSRE KLVSLKDYLE TFEQGFALGQ VITPAVFNRL IDGFSGDDRL PEIMEAILRS
QTQAYYGPAN AGHFGLALGS YAHFTSPIRR YADLIVHRAL VDSYRLEVPG KPKGLPAKTG
LGEADAKGLS RIGEAISALE RRAMEAERET VDRYVAAYLA GKVGEIVAAR ITGVQPFGFF
ATVDGLGGDG LVPVSTLGSE RFFYDEAART LDSEHGRVSF SVGQRLDLRL VDANPVSGAL
RFELPDAPEG GYRNRPPRRD GVKKAGKPMV GKRGRPANIK HKGRKR
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