| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_1179 |
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| Symbol | |
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| ID | 4080827 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingopyxis alaskensis RB2256 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008048 |
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| Strand | + |
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| Start bp | 1214764 |
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| End bp | 1218252 |
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| Gene Length | 3489 bp |
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| Protein Length | 1162 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 638009540 |
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| Product | DNA polymerase III, alpha subunit |
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| Protein accession | YP_616228 |
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| Protein GI | 103486667 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0587] DNA polymerase III, alpha subunit |
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| TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc) |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCTTCA GCCCCTTTGT CCCCCTGCGC GTCTTTTCCA GCTATACGAT GCTCGAAGGA
GCGATCGAGC CGAAAGCGAT CGCCAAGGCC GCGCGCGACC GCGGCTTTCC CGCGATCGCG
GTCGCCGACC GAAACGGGCT CTATGGCGTC ATGGCCTTTG GCGAGGCGTG CCAGGCGGCG
GGGGTGCAGC CGATCGTCGG CGCACTGCTC AGCGTCGCGC GGCCGGGCCA GCGGCTGGCG
AACGGCGCGC CGCTGATCGA CTGGCTCGCG CTCTATGCGC AGGACGCGCG CGGCTACCAC
AATCTCTGCG CGCTGGTGTC GGCGGCGCAT CTGGGGCGGC CGGTCGAGCA GGAGCCGCAT
GTCGCCTTGT CCGACATGAC GGGCAGGACC GATGGCCTCA TCTGCCTGAC CGGCGGCGGC
GAAGGCGCCT TGGCGCGCCT GCTCGCGGGC GAGCAGCAAA GCGCCGCCGA GGATTATATG
GAGCAACTGG AAGCGCTGTT CGGCGAACGG CTCTACATCG AATTGTCGCG GCGCGGCGAT
GCCACCGAAG CCGCCGCCGA AAATGCGCTG ATCGACATGG CCTATGCGCG CGCGCTGCCG
CTTGTCGCGA CCAATCCGGC GAATTTCGTC GAGCCGCAGT TCCATGCCGC GCACGATGCA
ATGCTGTGCA TCGCCCAGTC GGCCTATGTC GAAAGCGAGG ATCGCCGCGT CAGCAATCCC
GAAGCGTGGC TGAAGCCTGC CGAGGCGATG GAGGATGCCT TTTCCGACCT GCCCGAGGCG
ATCCGCAACA CGCTGGTGAT CGCCCAGCGC TGCGCCTTCA TGGCGCCGAA GCGCAAGCCG
ATCCTGCCGA GCCTCGCCGG CGATCGCGAG GGCGAGGCGG CGCAGTTGAA GGCCGACGCC
CATGCCGGAC TCGATGCCCG GCTGGCGCAT TATCCCGACC TGACCGACGA AGAACGGCAG
GCCTATGTCG AGCGGCTCGA TTATGAGATC GACGTCATCA CGCAAATGGG CTTTCCGGGC
TATTTCCTGA TCGTTGCCGA CTTCATCAAA TGGGCGAAGG CACAGGATAT TCCGGTGGGG
CCAGGCCGCG GATCGGGGGC GGGCAGCGTC GTCGCCTGGG CGCTGACGAT CACCGATCTT
GATCCCTTGA AGCTCGGTCT GCTCTTTGAA CGCTTCCTCA ACCCCGAGCG CGTGTCGATG
CCCGACTTCG ACATCGACTT CTGCGAAACA CGGCGTGGCG AAGTGATCCG CTATGTACAG
GAAAAATACG GTCGCGACAC CGTCGCGCAG ATCATCACCT TCGGTAAGCT AAAGGCACGC
GCAGTCCTGA AGGACACCGG CCGCGTGCTC CAGATGAGCT ATGGCCAGGT CGACCGGCTC
GCGAAGCTGG TGCCGAACCA TCCGACCGAC CCGTGGACGC TCGAACGCGC GCTCAACGGC
GTGTCCGAGT TGATGACCGA ATATAAGCAG GACGACGGGG TACGGCGGCT GTTCGACATG
GCGCGCCAGC TGGAAGGCCT GCCGCGGCAC AGTTCGACCC ACGCCGCCGG GGTGGTGATC
GGCGACCGGC CGCTCGACCA GCTCGTCCCG CTCTATCGCG ACCCGCGCTC GGACATGCCG
GTAACGCAGT TCGACATGAA ATATGTCGAG ACGGCGGGGC TGGTGAAGTT CGACTTTCTG
GGCCTCAAGA CGCTGTCGGT GCTCAAGGAA GCGCGGCGGC TGCTCGCGCT GCGCGGCATC
GATGTCGATC TCGACACGCT AAGATGGGAC GATGCCCAGG TCTATGAGCT GCTTCAGCGC
GGCGATACCG TCGGGGTGTT CCAGCTCGAA TCCGAAGGGA TGCGGCGCAC GCTGTCGGCG
GTCAAACCGA CCAGTTTCGG CGACATCATC GCGCTGGTCG CCCTCTATCG ACCGGGACCG
ATGGACAATA TCCCGCTGTT CGGCGCGCGC AAGAACGGTC GCGAACCAAT CGCCTATCCG
CACCCGCTGC TCGAAGGCAT CCTTGCCGAA ACATATGGCA TCTTCGTCTA TCAGGAACAG
GTGATGCAGG CCGCGCAGAT CCTCGCCGGC TACAGCCTCG GCGGGGCGGA CCTGCTCCGC
CGTGCGATGG GCAAGAAGAT CCAGGCCGAA ATGGACGCGC AGCGCGAGAC ATTCGTCAAG
GGCTGCGGCG AGCATAACCA GATCGACGCC AAGACCGCGA ACGAGCTGTT CGACTTGATC
GACAAATTTG CGGGCTATGG ATTCAACAAG AGCCACGCCG CCGCCTATGC TCTTCTCTCC
TATCAGACCG CCTGGTTGAA GGCGCATCAT CCGCACGAGT TTTTTGCCGC GTCGATGTCG
TTCGACAGCC ACCAGACCGA CAAATTATCG GTGTTCATCG ACGACATGCG CCGGCTGGGC
ATCGACATCG CGCCGCCGTC GATCAACGAG AGCGAGGCCG ATTTCTCGGT TGGCCGCACC
GACGATGGAC TGGCGGTACG CTACGCGCTC GGGGCGCTCA AGGGCGTCGG CGAGAAAGCC
ATGGAGGCGC TGGTCGCCGA GCGGCAGGCG AGGGGCGATT TCGCTTCGCT CGACGATTTC
GCCAGCCGCA TCGACCCCAA GCTGCTCAAT CGGCGGCAGA TCGAGGCGCT GGCCGGCGCC
GGAGCGTTCG ATTGTGTCGA ACCCGACCGC CCGCGTGCCT TTGCCGGTGC CGAGGCTCTG
CTTGCCTGCG CCAACTCGTC GGCGCACGAA CGCTCGACCG GACAGGGCGG CCTGTTCGGC
GGCGACATCG CGATCGCACC GACATTGCAA CTTCCCGCCG CCGAACCCTG GACACTCGCC
GAGCGGATGA CGCGCGAAAA GGAGGCGTTC GGCTTTTATT TCTCGGCGCA CCCGGTCGAG
CAATATGAAG CGATCCTGTC GGCGCGCGGC GCGCGCTCAT ATGGCGACAT ATGCGAAAAT
GTCGAAATGA CGCCGGGCAC GCGCATCCCG ATGGTGATGG CAGCGATGGT CGAAAGCGCG
CGGGCGCGCG TGTCGCAGCG CGGCAACCGC TTCCTCAACC TGACGCTCTC CGATCGCAGC
GGTCAGTTCC AGTCGAGCTG TTTCGACGAG GCGGCAGGCA GGGTGCTGGA GGCGTTGGCA
GACGAGGGCG GCTGCGCGCT GCTCTCGGTC GAACTCGACC TGCTCGAGGG GGAGGAGACG
CCACGGGTCA CGGTGCGCGG CGCGCAGTCG CTCGCCGACA TCGCGGCGAC CGCCTCGCTC
CAGCTCCTCT GCCGCGTCGA GGCGCCCGAG GCCATCGACG AAATGGCGCG CCTGCTCGAG
AAACGCGGCG GCGCGCGCGG GCGGGTGATC GTCGTCACGC GCAATCCGCT GACCCACGAC
GATGTGCGGA TCGAGCTGGG ACGCGGATTT GTGCTCGGTC CCGACATAGT TGCCCGCCTC
GACCTGGTGG CAGGGATTTC CGAAGCGGCG CTGTCGCTGG TCGCGCCGCG CGAGTTCCGG
GTGCGCTGA
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| Protein sequence | MAFSPFVPLR VFSSYTMLEG AIEPKAIAKA ARDRGFPAIA VADRNGLYGV MAFGEACQAA
GVQPIVGALL SVARPGQRLA NGAPLIDWLA LYAQDARGYH NLCALVSAAH LGRPVEQEPH
VALSDMTGRT DGLICLTGGG EGALARLLAG EQQSAAEDYM EQLEALFGER LYIELSRRGD
ATEAAAENAL IDMAYARALP LVATNPANFV EPQFHAAHDA MLCIAQSAYV ESEDRRVSNP
EAWLKPAEAM EDAFSDLPEA IRNTLVIAQR CAFMAPKRKP ILPSLAGDRE GEAAQLKADA
HAGLDARLAH YPDLTDEERQ AYVERLDYEI DVITQMGFPG YFLIVADFIK WAKAQDIPVG
PGRGSGAGSV VAWALTITDL DPLKLGLLFE RFLNPERVSM PDFDIDFCET RRGEVIRYVQ
EKYGRDTVAQ IITFGKLKAR AVLKDTGRVL QMSYGQVDRL AKLVPNHPTD PWTLERALNG
VSELMTEYKQ DDGVRRLFDM ARQLEGLPRH SSTHAAGVVI GDRPLDQLVP LYRDPRSDMP
VTQFDMKYVE TAGLVKFDFL GLKTLSVLKE ARRLLALRGI DVDLDTLRWD DAQVYELLQR
GDTVGVFQLE SEGMRRTLSA VKPTSFGDII ALVALYRPGP MDNIPLFGAR KNGREPIAYP
HPLLEGILAE TYGIFVYQEQ VMQAAQILAG YSLGGADLLR RAMGKKIQAE MDAQRETFVK
GCGEHNQIDA KTANELFDLI DKFAGYGFNK SHAAAYALLS YQTAWLKAHH PHEFFAASMS
FDSHQTDKLS VFIDDMRRLG IDIAPPSINE SEADFSVGRT DDGLAVRYAL GALKGVGEKA
MEALVAERQA RGDFASLDDF ASRIDPKLLN RRQIEALAGA GAFDCVEPDR PRAFAGAEAL
LACANSSAHE RSTGQGGLFG GDIAIAPTLQ LPAAEPWTLA ERMTREKEAF GFYFSAHPVE
QYEAILSARG ARSYGDICEN VEMTPGTRIP MVMAAMVESA RARVSQRGNR FLNLTLSDRS
GQFQSSCFDE AAGRVLEALA DEGGCALLSV ELDLLEGEET PRVTVRGAQS LADIAATASL
QLLCRVEAPE AIDEMARLLE KRGGARGRVI VVTRNPLTHD DVRIELGRGF VLGPDIVARL
DLVAGISEAA LSLVAPREFR VR
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