| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_1159 |
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| Symbol | |
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| ID | 4080865 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingopyxis alaskensis RB2256 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008048 |
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| Strand | - |
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| Start bp | 1192406 |
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| End bp | 1193755 |
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| Gene Length | 1350 bp |
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| Protein Length | 449 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 638009520 |
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| Product | tRNA (uracil-5-)-methyltransferase Gid |
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| Protein accession | YP_616208 |
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| Protein GI | 103486647 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1206] NAD(FAD)-utilizing enzyme possibly involved in translation |
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| TIGRFAM ID | [TIGR00137] tRNA:m(5)U-54 methyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.190702 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.116808 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGGACC ACGACATTCA CATCATCGGC GGAGGGCTCG CCGGGTCCGA AGCGGCGTGG
CAGCTCGCCG AGGCGGGTTA TCATGTGCGC CTCTCCGAAA TGCGCGGCGG CGGCGACATG
ACTCCCGCGC ATCAGGGCGA CGGGCTTGCC GAAATGGTAT GCTCGAACAG TTTTCGCAGC
GACGACGGCG ACAGCAACGC CGTCGGCCTT CTCCATCGCG AGATGCGCGC GCTGGGCTCG
ATCATCATGC GCGAAGCCGA CGCGACCAAG GTGCCCGCCG GCTCGGCGCT CGCGGTCGAC
CGCGATCTTT TCTCGGGCGG CGTGACGCGC GCGCTGTCGG AGCATCCCAA TATCACCATC
GTCCGCGAAC GCATCGACAA ACTCCCGACC GAAGGCCTCA CCATCGTCGC GACCGGACCG
CTCACCGCGG CATCGCTCGC GGAAAGCATC GGCGCTGCGA CCGGCAAGGA TGCGCTCGCC
TTTTTCGACG CCATCGCCCC CATCGTCTAT CGCGACAGCA TCGACATGGA CATTGCGTGG
ATGGCGAGCC GCTGGGACAG GGTCGGGCCG ATCGGCGATG GCAGGGACTA TATCAACTGT
CCGCTGGACA AGGATCAGTA TTACGCCTTC GTCCAGGGGC TGCTCGATGG TGAAAAGACC
GAGTTCAAGG ATTGGGAAAA GGACACGCCC TATTTCGAGG GCTGCATGCC GATCGAGGTG
ATGGCCGAAC GCGGGGTGGA GACGCTGCGC TTCGGCCCGA TGAAGGGCGT CGGGCTCGAC
AATCCGCGCA CCGGACGCTG GCCCTATGCG GTCGTCCAGT TGCGGCAGGA CAATGCGCTG
GGCACGCTCT GGAACATGGT GGGTTTCCAG ACCAAGCTCA AACATGCCGA GCAGGTCCGG
CTGTTCCGCA CCATACCGGG GCTGGAAAAG GCCGAGTTCG CGAGGTTGGG TGGGCTTCAC
CGCAACAGCT TCATCCGCTC GCCCGAATTG CTCGACCGGC AGCTTCGCTT GAAGTCGGCG
CCGCACATCC GCTTCGCGGG GCAGATAACC GGCTGCGAGG GCTATGTCGA AAGCGCCGCG
ATCGGCCTCG TCGCCGCGCG CTTCGCCGCC GCCGAACTTG GCGGGCGCGC CCTGCCCCCG
CCACCGCCCG AAACCGCGCT CGGCGCGCTG CTCTGCCACA TCACCGGCGG CGCCGATGCG
TCATCCTATC AGCCGATGAA CGTCAATTTC GGGCTTTTTC CACCGCTGGC GGACGATGTG
CGGAAGAAAG ACCGCAAGCT CGGCTATACG CAGCGCGCGG GCAAGGCGCT GGCGGAGTGG
ATGACGGTTG CGGCGGGTGT GGCCGCCTGA
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| Protein sequence | MADHDIHIIG GGLAGSEAAW QLAEAGYHVR LSEMRGGGDM TPAHQGDGLA EMVCSNSFRS
DDGDSNAVGL LHREMRALGS IIMREADATK VPAGSALAVD RDLFSGGVTR ALSEHPNITI
VRERIDKLPT EGLTIVATGP LTAASLAESI GAATGKDALA FFDAIAPIVY RDSIDMDIAW
MASRWDRVGP IGDGRDYINC PLDKDQYYAF VQGLLDGEKT EFKDWEKDTP YFEGCMPIEV
MAERGVETLR FGPMKGVGLD NPRTGRWPYA VVQLRQDNAL GTLWNMVGFQ TKLKHAEQVR
LFRTIPGLEK AEFARLGGLH RNSFIRSPEL LDRQLRLKSA PHIRFAGQIT GCEGYVESAA
IGLVAARFAA AELGGRALPP PPPETALGAL LCHITGGADA SSYQPMNVNF GLFPPLADDV
RKKDRKLGYT QRAGKALAEW MTVAAGVAA
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