| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_1126 |
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| Symbol | |
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| ID | 4081486 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingopyxis alaskensis RB2256 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008048 |
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| Strand | - |
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| Start bp | 1164582 |
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| End bp | 1165514 |
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| Gene Length | 933 bp |
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| Protein Length | 310 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 638009487 |
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| Product | type II secretion system protein |
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| Protein accession | YP_616175 |
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| Protein GI | 103486614 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4965] Flp pilus assembly protein TadB |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.0371029 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.497639 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTTTTG CGGTTCTTGC GATCCTGCTT CAGGGTCCGT CGGCGGGCAA GGCAAAGTCG
CGGCGGCTGG CGATGGTCAA GGATCGCCAT GCCGCTTCGA CCGAGGCAGT CGTCGCGGCG
CAGATGCGCA AAACCATCCA GTCGGTGGGA CGCCGGGGCA ACTCGTCGCT GACCAGCCTG
CTTCCCCGCC GCGAGGAACT CGAAAAGCGC ATCCGGCGGA CAGGCAAGAG CTGGACGCTT
ACCCAATATA TGTTCGCCTC CATGGGACTG TTTGTCGTGG CGACCGGCGC GATGCTGATC
GTCCGCGCCC CGTTCCCGAT GGCCGCGCTC GTCGGACTGC TGATCAGCCT TGGCCTGCCC
TATCTGGTCG TCGGCATGGC GATCAAGAAG CGCGTCGCAC AATTCAATGC GCGCTTTCCC
GATGCGATCG ACCTGCTGGT GCGCGGGCTG CGGTCGGGCC TGCCGGTGAC CGAGACCTTC
CAGGTCGTCA GCCAGGAACT GCCCGGCCCT GTCGGCGAGG AGTTCAAAGG CGTCGTCGAG
CGGATCCGGA TCGGTAACAC GATGGAGGCG GCGCTTCAGG AAACGGCCGA AATGCTCGGC
ACGCCCGAGT TCCAGTTCTT CTGCATCACC ATCCAGATCC AGCGCGAGAC GGGCGGCAAC
CTTGCGGAAA CACTGGCCAA CCTGTCGGAC GTGCTGCGCA AACGTGCGCA AATGAAGCTG
AAGATCCGCG CAATGTCATC GGAAGCCAAG GCGTCGGCCT ATATCGTCGG CGCGCTTCCC
TTTTTCGTCT TCGGCGTCGT GTGGACGGTG AACCCCAGCT ATCTTGCGGG TTTCTTCGTC
GAACAACGCC TGATCGTCGC CGGGATCGGC GGGCTGATCT GGATGAGCAT CGGGGCCGGA
ATCATGGCCA AGATGGTCAA TTTCGAGATT TGA
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| Protein sequence | MAFAVLAILL QGPSAGKAKS RRLAMVKDRH AASTEAVVAA QMRKTIQSVG RRGNSSLTSL
LPRREELEKR IRRTGKSWTL TQYMFASMGL FVVATGAMLI VRAPFPMAAL VGLLISLGLP
YLVVGMAIKK RVAQFNARFP DAIDLLVRGL RSGLPVTETF QVVSQELPGP VGEEFKGVVE
RIRIGNTMEA ALQETAEMLG TPEFQFFCIT IQIQRETGGN LAETLANLSD VLRKRAQMKL
KIRAMSSEAK ASAYIVGALP FFVFGVVWTV NPSYLAGFFV EQRLIVAGIG GLIWMSIGAG
IMAKMVNFEI
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