| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_1125 |
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| Symbol | |
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| ID | 4081485 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingopyxis alaskensis RB2256 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008048 |
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| Strand | - |
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| Start bp | 1163525 |
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| End bp | 1164568 |
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| Gene Length | 1044 bp |
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| Protein Length | 347 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 638009486 |
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| Product | type II secretion system protein |
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| Protein accession | YP_616174 |
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| Protein GI | 103486613 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2064] Flp pilus assembly protein TadC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.394553 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.522315 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTAGCA CCCTCCCCGT CACCGCGGCA TTTTCGGGCG CCCAGACCGG ACCCTCGCTC
CTCGGCATCG ACGTCGTCTG GGCGGGTACG CTGCTCGCCG CGATCGGCGT TTTTGCCGTG
CTCGTCGCCA TCTACAATGC GCTGACCGTA CGCAACCCGA TGACAAAGCG CGTCAAGGCG
CTGAACGAGC GCCGCGAACA GTTGAAGGCC GGCATCACCG CCTCCACCGC CAAGCGTCGC
GCGCGGCTCG TGCGCAAAAA CCAGACGGCC GACCGAATGC GCAATTTCCT GGGCCGCTTG
CAGGTCTTGC AGGAAGGGCA GATCAAGGAG GTTCAGCAAA AGCTGGCCCA GGCCGGCATC
CGGTCAAAGG ATCTGGCGGT CGCGGTCATT TTCGGGCGAA TGGTGCTGCC GATCCTGTTC
GGCGGTCTGG CCCTCTTCCT GATCTATATT GTCGACATGT GGCCGACGCT GACGCCGTTC
AAGCGGTCGG GTTTTACCAT GGCCGCGCTG ATTCTCGGTT ACAAGGCGCC GGACCTGTTC
GTCGACAATA TGCGCCAGAA GCGTACCGAT GCCATCCGCA AGGGTCTTCC GGACGCGCTC
GACCTGCTCG TGATCTGCGC CGAGGCGGGG CTGACGGTCG ACTCGGCCTT CTCGCGCGTA
TCGAAGGAAC TGGGCCGCGC CTATCCCGAA CTCGGCGAGG AGTTTGCGCT TACATCGATC
GAGCTCGGCT TCCTCACCGA GCGCCGACAG GCATTCGAGA ACCTTGCCTA TCGCGTCAAT
CTGGAATCGG TGAAGGGCGT CGTCACGACG ATGATCCAGA CCGAAAAATA TGGCACGCCG
CTCGCCAGCG CGCTGCGCGT GCTGTCGGCC GAGTTTCGCA ATGAGCGCAT GATGCGGGCC
GAGGAAAAAG CCGCGCGCCT GCCTGCGATC ATGACGGTAC CGCTGATCCT GTTCATCCTG
CCGGTGCTGT TCATCGTCAT CCTTGGACCC GCGGCCTGTT CGCTGAGCGA CGCAATGGCT
GGCGGCAGCT TCGGCGGCCG ATAG
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| Protein sequence | MISTLPVTAA FSGAQTGPSL LGIDVVWAGT LLAAIGVFAV LVAIYNALTV RNPMTKRVKA
LNERREQLKA GITASTAKRR ARLVRKNQTA DRMRNFLGRL QVLQEGQIKE VQQKLAQAGI
RSKDLAVAVI FGRMVLPILF GGLALFLIYI VDMWPTLTPF KRSGFTMAAL ILGYKAPDLF
VDNMRQKRTD AIRKGLPDAL DLLVICAEAG LTVDSAFSRV SKELGRAYPE LGEEFALTSI
ELGFLTERRQ AFENLAYRVN LESVKGVVTT MIQTEKYGTP LASALRVLSA EFRNERMMRA
EEKAARLPAI MTVPLILFIL PVLFIVILGP AACSLSDAMA GGSFGGR
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