| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_1122 |
|---|
| Symbol | |
|---|
| ID | 4081482 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | + |
|---|
| Start bp | 1159295 |
|---|
| End bp | 1160611 |
|---|
| Gene Length | 1317 bp |
|---|
| Protein Length | 438 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 638009483 |
|---|
| Product | beta alanine--pyruvate transaminase |
|---|
| Protein accession | YP_616171 |
|---|
| Protein GI | 103486610 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0161] Adenosylmethionine-8-amino-7-oxononanoate aminotransferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.456667 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGGGGCG ACAACGACCA GCTGGCAAGT TTCTGGATGC CCTTCACCGC GAACCGCGCG
TACAAGGCGC AGCCGCGCCA GCTCGTATCG GCAAGCGGCA TGTTTTACCG GTCGAGCGAC
GGGCGCGACA TACTCGACGG CACCGCGGGC CTGTGGTGCA GCAATGCCGG TCATTGCCGC
CCCGAAATCA CCGAGGCGAT CGCCAGAACC GCGGCGACGC TGGACTTTGC ACCGACGTTT
CAGCTGGGGC ACCCGCTGCC TTTTGAGCTG GCGCAGCGCC TCGCGGCGTT GATGCCCGAC
GGGCTCGACC GGATATTCTT CACCAACAGC GGGTCGGAGT CGGTCGATAC GGCGCTCAAA
ATCGCGCTCG CGATCCAGCG CGCGAAGGGG CAGGGGGCGC GCACCCGGTT GATCGGGCGC
GAACGCGGCT ACCACGGCAC CGGCTTTGGC GGGATCAGCG TTGGCGGTCT CGTCAACAAC
CGTCGCGCCT TCGGCGGGGG TTTGCCGGGC GTAGACCATC TCCGTCATAC GCATGATCTG
GAGCGCAACG CTTTCAGTCG CGGATTCCCG CAGCATGGCG CCGAACTCGC CGACGATCTG
CAACGCCTGG TCGATCTGCA CGGCGCCGAG ACGATCGCTG CGGTTATCGT CGAACCGATG
GCGGGATCGA CCGGCGTGCT CGTGCCGCCC GTTGGCTACC TCTCACGCTT GCGCGAGATT
TGCGACCGGC ATGGCATCAT CCTGATCTTC GACGAAGTCA TCACCGCTTT CGGGCGTGTC
GGCGGCGCAA CGGCGTCGCA AATGTGGGGC GTGACGCCTG ACATCATCAC CATGGCCAAG
GGCCTGACCA ATGCCACGGT GCCGATGGGG GCGGTGGCGG TGAAGCGCGA GCTGCACGAT
GCGGTGATCG ACAGCGCGCC GGGCGGGATC GAGCTGTTCC ACGGCTACAC CTATTCAGGC
CACCCCTTGG CGAGCGCGGC GGGGCTGGCG ACGCTGGACC TCTATGCCCG CGACGGGCTG
TTCGACCGTG CGAGCGAACT CGGCGCCTAT TGGGAGGATG CGGCACACAG CCTGAAGGGG
CGGCGGCACG TCATCGACGT CCGCACGATC GGCCTCGTCG CAGGCATCGA ACTTGAACCA
CGCCCCGGCG CCCCCACCGC GCGCGCGATG GAACTGTTCC ACGCCTGTTT CGACAACGGC
CTGCTCGTGC GCGCTACGGG CGATATCATC GCGCTGTCGC CGCCGCTGAT CGTCGAGAAG
GAACAAATCG ACGCAATGTT CGGGACGATC GCCGACCTCA TCGACCGGAT CGATTAG
|
|---|
| Protein sequence | MRGDNDQLAS FWMPFTANRA YKAQPRQLVS ASGMFYRSSD GRDILDGTAG LWCSNAGHCR
PEITEAIART AATLDFAPTF QLGHPLPFEL AQRLAALMPD GLDRIFFTNS GSESVDTALK
IALAIQRAKG QGARTRLIGR ERGYHGTGFG GISVGGLVNN RRAFGGGLPG VDHLRHTHDL
ERNAFSRGFP QHGAELADDL QRLVDLHGAE TIAAVIVEPM AGSTGVLVPP VGYLSRLREI
CDRHGIILIF DEVITAFGRV GGATASQMWG VTPDIITMAK GLTNATVPMG AVAVKRELHD
AVIDSAPGGI ELFHGYTYSG HPLASAAGLA TLDLYARDGL FDRASELGAY WEDAAHSLKG
RRHVIDVRTI GLVAGIELEP RPGAPTARAM ELFHACFDNG LLVRATGDII ALSPPLIVEK
EQIDAMFGTI ADLIDRID
|
|---|
| |