| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_1120 |
|---|
| Symbol | |
|---|
| ID | 4081480 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | - |
|---|
| Start bp | 1156409 |
|---|
| End bp | 1157674 |
|---|
| Gene Length | 1266 bp |
|---|
| Protein Length | 421 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 638009481 |
|---|
| Product | FAD dependent oxidoreductase |
|---|
| Protein accession | YP_616169 |
|---|
| Protein GI | 103486608 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGACC CGCTGAACCA CAGCTATTAC GCCGCGACCG CGCACGAATG GCGGCCGCGC
GATCATATTG AGGACGATTT CAGCTGCGAC GTTGCGGTCA TCGGCGGTGG CTTCACCGGG
CTGAGCGCCG CGCTCGCCTG CGCCGAGCGC GGTTTTTCGG TCATTTTGGT CGAAGCCGAG
CATGTCGGCT TCGGCGCCTC GGGGCGCAAC GGGGGGCAGT TGATCCCCGG ATTGCGCTGG
ACCGCATCCG AACTGGACAC CGAGTTCGGC CACGAGCGCG CCGACGCGCT GTTCGACCTG
TGCTGGCGCG ACAACCGCGT GAAGGCCCGG ATCGCAAAGC ATGGCATCGA CTGCGACCTC
AAGTCCGGGC ACCTTGAGGC GGCGTGGACG CCGGGCGACT TCGACGCGAT GCGGCGCGAG
GCGGACTATC TGGCGACGCG TTTCGGTTAC GAAACCGAGG TTGTCGAAAA GGCGGGGATG
GACGCGCATG TCGCCAGTCC GCGCTATCAC GGCGGCGTTT ATGACGCCCG CGCCGGGCAT
TTTCACCCGC TGAACTACGC CGTCGGTCTG GCGAAGGCCG CCGAGGCGGC AGGAGTCCGG
ATTTTTGAAG GCCGGCGCGC CACCTCGATC CGCGCGGGCG ATCCCGGCCA ACTGCTGCTC
GGCAAGGTGG CGGTCGAAGC GCGCTATTTC ATCGACGCCA CCGACAGCTG GATCGGCGAC
CTCGAACCCG ATCTCGGCCG CTACACCGTG CCGATCATGA ACTATAATAT CGCGACCGCG
CCGCTCGCCA ACGCCGACGA ACTGCTGCCA AGCGACGCCG CGGTCGCCGA CAGCCGCTTC
GTGCTCAACT ATTTCCGCCT GTCCGCCGAC AAGCGCCTCA TATTCGGCGG GGGCGAGCGC
TATTCGCAGA CGCCGCCGCG CGACATCGCC GCATTCGTGC GGCCCTTCAT GACCGGAGTG
TTCCCGCAAA TCGCCGACGC GAAGATCGAT TATGGCTGGG GCGGCGCGGT TGGGGTGACG
ATGAACCGCC TGCCGCATAT CGGACGGCGC GGAAACATGT TTTTCGCGCA CGGCTTTTCG
GGGCACGGCG CGCTGGTGAC GACGCTTGCG GGCGAACTCA TCGCCGAAGC AATGGCGGGG
ACCGCCGAGC GCTTTGACCT GCTCGCGAAC CTTCCCTCCC GCCCCTTCCC CGGAGGCAAC
TGGCTTCAAC GCCCGCTCGC GACGCTGGGA CTGCTTTTCT ATGCATTGAA GGACCGGCTC
GGATGA
|
|---|
| Protein sequence | MSDPLNHSYY AATAHEWRPR DHIEDDFSCD VAVIGGGFTG LSAALACAER GFSVILVEAE
HVGFGASGRN GGQLIPGLRW TASELDTEFG HERADALFDL CWRDNRVKAR IAKHGIDCDL
KSGHLEAAWT PGDFDAMRRE ADYLATRFGY ETEVVEKAGM DAHVASPRYH GGVYDARAGH
FHPLNYAVGL AKAAEAAGVR IFEGRRATSI RAGDPGQLLL GKVAVEARYF IDATDSWIGD
LEPDLGRYTV PIMNYNIATA PLANADELLP SDAAVADSRF VLNYFRLSAD KRLIFGGGER
YSQTPPRDIA AFVRPFMTGV FPQIADAKID YGWGGAVGVT MNRLPHIGRR GNMFFAHGFS
GHGALVTTLA GELIAEAMAG TAERFDLLAN LPSRPFPGGN WLQRPLATLG LLFYALKDRL
G
|
|---|
| |