| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_1116 |
|---|
| Symbol | |
|---|
| ID | 4081476 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | - |
|---|
| Start bp | 1151544 |
|---|
| End bp | 1152449 |
|---|
| Gene Length | 906 bp |
|---|
| Protein Length | 301 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 638009477 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_616165 |
|---|
| Protein GI | 103486604 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1176] ABC-type spermidine/putrescine transport system, permease component I |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.378424 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGCCGAGC AGGACTGGAA AACCAACAGG GGCGTTTTCG CGGCGGTGTC GCTGCCGACG
CTCCTGTGGG TTCTGCTCTT CTTCCTCGTC CCCATGGCGA TCGTCTGGCT CTACAGCTTT
GGCGAAAACC GCGGGCTCAC CGAAATCGCC ATTTCGGGCA CGCTCGACAA TTACAAGCGC
GCCACCGAGT GGCTCTACCT CACCATATTC GGCAAGAGTT TCGCGGTCGC GGCGCTCGTT
ACGCTCATCT GCCTGATCAT CGGTTTTCCG GTCGCGATGG CGATCACCTT TGCCAGCGAG
AAGTGGCGGC CGTGGCTGCT CCTCGGCATC ATGCTGCCCT TCTGGACCAA CCTGCTCATC
CGCACCTATG CGCTGATGAT GCTGCTCGGC ACGCAGGGCT TCGCCAACAA GGGCCTCGGT
GTCCTGTGGG AAGGCGCAAG CTGGATGAAG GCGCTTGTCG GGCTCCAGCC GCTCCCGACG
TGGGAGCCGG TCGAACTGCT CTTCAACAAT TTCGCGGTCG TGTTCGGACT CGTCTATGTC
CACCTGCCCT TCATGGTGCT GCCGCTCTAT GCCGCGCTCG ACCGGCTCGA CCGCAGCCTG
ATCGAGGCGA GCCTCGATCT GGGCGCCGGC CATTTCCGCA CGATCATGCG GATCGTCGTC
CCGCTCGCCG CCCCCGGCAT CATCGCCGGG GTGATGATTA CCCTGATTCC CGCGCTCGGC
GCCTATCTTA CCCCCGACCT GATGGGTGGC ACCGACAGCC AGATGATCGC CAATGTGATC
GAGCGCCAGT TCAAGAAGGC GAATGACTGG CCTTTCGGCG CCGCGCTGTC CTTTCTGCTC
ATCTACGCGA TGTTCATCCT CATTGCGCTG CAATCGCTGC GGCGCCGCGC GCCGGAGGCG
CATTGA
|
|---|
| Protein sequence | MAEQDWKTNR GVFAAVSLPT LLWVLLFFLV PMAIVWLYSF GENRGLTEIA ISGTLDNYKR
ATEWLYLTIF GKSFAVAALV TLICLIIGFP VAMAITFASE KWRPWLLLGI MLPFWTNLLI
RTYALMMLLG TQGFANKGLG VLWEGASWMK ALVGLQPLPT WEPVELLFNN FAVVFGLVYV
HLPFMVLPLY AALDRLDRSL IEASLDLGAG HFRTIMRIVV PLAAPGIIAG VMITLIPALG
AYLTPDLMGG TDSQMIANVI ERQFKKANDW PFGAALSFLL IYAMFILIAL QSLRRRAPEA
H
|
|---|
| |