Gene Sala_1114 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSala_1114 
Symbol 
ID4082052 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingopyxis alaskensis RB2256 
KingdomBacteria 
Replicon accessionNC_008048 
Strand
Start bp1149569 
End bp1150699 
Gene Length1131 bp 
Protein Length376 aa 
Translation table11 
GC content65% 
IMG OID638009475 
Productspermidine/putrescine ABC transporter ATP-binding subunit 
Protein accessionYP_616163 
Protein GI103486602 
COG category[E] Amino acid transport and metabolism 
COG ID[COG3842] ABC-type spermidine/putrescine transport systems, ATPase components 
TIGRFAM ID[TIGR01187] spermidine/putrescine ABC transporter ATP-binding subunit 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.188638 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCGAAC CCGCCCAACC GATCATCCAG ATCCAGAACG TCTCGAAACG CTTCGGCAAG 
GTCACGGCGG TCGACAATGT CAGCCTCGAC ATCAACGCGG GCGAGTTCTT CGTGCTGCTC
GGCCCCTCGG GCTGCGGCAA AACGACCTTG CTGCGGATGA TCGCGGGGTT CGAACTGCCG
AGCGAGGGTC GCATATTGAT CGACGGGCAG GATATGGCGG GCATCCCGCC GAACAAGCGC
CCGGTGAATA TGGTGTTCCA GAGCTATGCG GTGTTTCCGC ACATGAGCGT CGCCGACAAT
GTCGCTTACG GACTCAGGAT CGCAGGCGTG AAGGGCGGCG AGGTCCGAGA CCGCGTTGCC
GAAGCGCTCG CGCTGGTCAA GCTCAGCGGA TTCGAGGGCC GGATGCCCGA CCAGATGTCG
GGCGGGCAGC GCCAGCGCGT CGCACTCGCG CGAAGCCTGG TGATGCGGCC CAAGGTGCTG
TTGCTCGACG AACCGCTCTC GGCGCTCGAT GCGAAGTTGC GCGCGCAGAT GCAGTTCGAG
CTGTCGGAGC TGCAGGAAAA GGTCGGCATC ACCTTCGTCA CCGTGACGCA CGATCAGGAC
GAGGCGTTGT CGATGGCGTG CCGGATCGCG GTGATCAACA AGGGCGACGT CGCGCAGCTC
GCCACGCCGT CGGACCTTTA CGAATATCCC GCCAACCGCT TCGTCGCCGA TTTCGTCGGG
TCGGTGAACA TCTTCGAAGG CAAGCTGACG CTCGATGAGC CTGACAAGGC CGCGGTCGAC
TGTCCCGGCC TCGGCAAGGT CTATCTCAAC CATGGGGTGA CAGGACCGCA TGGCGCCGAC
GTGTGGGTCG CGCTTCGGCC GGAGAAAATC TACCTCCACG TCCCCGGCGC CGGCAAGGCG
GTGCGCGCCG CGGCGGAGGA TGCCCCCGAC GGCCACAATT TCGCGCGCGG GACGATCAAG
GGCATGTCCT ACCTCGGCGA CATCACGCTG TTCGAGATCG AACTGGACAG CGGCGCACGC
CTCCGCGTCT CGCGCCCCAA TCTGTCGCGC CACGACCAGG AGGATTTCAC CTGGGACGAC
AGGGTGTCGA TGCACTGGCG CGCCGACAGC CCGGTGGTGT TGCTGGGATA A
 
Protein sequence
MTEPAQPIIQ IQNVSKRFGK VTAVDNVSLD INAGEFFVLL GPSGCGKTTL LRMIAGFELP 
SEGRILIDGQ DMAGIPPNKR PVNMVFQSYA VFPHMSVADN VAYGLRIAGV KGGEVRDRVA
EALALVKLSG FEGRMPDQMS GGQRQRVALA RSLVMRPKVL LLDEPLSALD AKLRAQMQFE
LSELQEKVGI TFVTVTHDQD EALSMACRIA VINKGDVAQL ATPSDLYEYP ANRFVADFVG
SVNIFEGKLT LDEPDKAAVD CPGLGKVYLN HGVTGPHGAD VWVALRPEKI YLHVPGAGKA
VRAAAEDAPD GHNFARGTIK GMSYLGDITL FEIELDSGAR LRVSRPNLSR HDQEDFTWDD
RVSMHWRADS PVVLLG