| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_1108 |
|---|
| Symbol | |
|---|
| ID | 4082046 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | - |
|---|
| Start bp | 1140939 |
|---|
| End bp | 1141460 |
|---|
| Gene Length | 522 bp |
|---|
| Protein Length | 173 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 638009470 |
|---|
| Product | ECF subfamily RNA polymerase sigma-24 factor |
|---|
| Protein accession | YP_616158 |
|---|
| Protein GI | 103486597 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGAGC CGCGCGATCA GAGCGACGCC CTGCAGGGCA TTGAGGGCGT ATTGCTCGCC
CATCGCGACC GCATCCTGCG CTTCCTCGAA ATGCGCGGTG CGGGCGACAG TGCGGAAGAT
CTGTTCCAGG ATTTGTGGAT GCGGCTGACC GAACGCGCGA CGGGTCCCGT CGCCGATCCG
CTATCCTATG CGATGCGCGC GGCCAACAAT CTGATGCTCG ATCGCTACCG CTCGGCGCGC
CAGCGCGAGC TTCGCGACAA GGCGTGGGGC GAGAGCGCGG CGATGCACAG CCCGTCGAGC
GAGGCGGCGC TCATCTCGCG CGAGCAACTC GCGCTCGCCG ATGCGGCGAT CGCGGCAACG
GGCGAGCGGC CCGCGCGCAT CTTTCGCCGC TTTCGCGTCG ATGGCGTCCA CCAGCGCGAG
ATTGCCCGCG AAATGGGCGT CAGCCTGAGC ACGGTCGAAG CCGATCTGCG CAAGGTTTAT
GCGGCGCTGG CGGCGCTGAG GAGGCAGTTC GATGCCGGTT GA
|
|---|
| Protein sequence | MTEPRDQSDA LQGIEGVLLA HRDRILRFLE MRGAGDSAED LFQDLWMRLT ERATGPVADP
LSYAMRAANN LMLDRYRSAR QRELRDKAWG ESAAMHSPSS EAALISREQL ALADAAIAAT
GERPARIFRR FRVDGVHQRE IAREMGVSLS TVEADLRKVY AALAALRRQF DAG
|
|---|
| |