| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_1047 |
|---|
| Symbol | |
|---|
| ID | 4080772 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | - |
|---|
| Start bp | 1080233 |
|---|
| End bp | 1081546 |
|---|
| Gene Length | 1314 bp |
|---|
| Protein Length | 437 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 638009407 |
|---|
| Product | Fmu (Sun) |
|---|
| Protein accession | YP_616097 |
|---|
| Protein GI | 103486536 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0144] tRNA and rRNA cytosine-C5-methylases |
|---|
| TIGRFAM ID | [TIGR00563] ribosomal RNA small subunit methyltransferase RsmB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.334338 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCACGGC CCGTCATGGC TGATCGCCGT TCCTCCCGGA GGCGACCGCG CGGCGAGGCC
GATCCGCCGG GCCTCGCGCC GCGCCGCGCC GCGCTGCGCC TGCTCGACGC GATCGTGCGC
CGCGGCGACC CGCTCGACGT TGCAATGCAC GCCGCGGCGC AAGGGCTGGT CGGCGCCGAC
CGTGCCTTTG CCGTCGCCAT CGCGTCCGAA GCGCTGCGCT GGATGACCGA CATCGACGCG
CTGGTCGACG GCGCGACCGC GCAGCCGTTG CCCGACGATG TCAAATCGCG CGCGGTGCTC
AGGATCGCAC TCGCGCAGTT GCTCGTGCTC AAAAGCCCCG GCCACGCCGT GGTCGCGACT
GCGCTTCCCC TCGTCGATGG CGGCCCGCGG CGTCTTGTCC ACGCGATCCT GTCGCGTGCA
CAGAAGGAAA AGTGGGAACT GCCGGCGCGT GCGTCCTTGC CGCCCGCCGC GGCAGAGCGC
TGGACCGCGC AATGGGGCGC CACGATGATC GAAGCCGCCG CCGAAAGCTG GAGCGTCCCG
CCACCGATCG ACCTCAGCTT CGCTGCCGAA CCCGCCCCCG ACGAATGGCC CGATGCCGTC
GCCCTCGCAC CGCGCCACCG CCGCCTTCCG CGCGGGCAGG CGGTCGAGGC GATGCCGGGT
TTCGCCGAAG GCGGCTGGTG GGTGCAGGAT CTCGCCGCCA GCCTGCCCGC GCGCCTTCTC
GGCGCGGGCG CCGGGCGGAC CATTCTCGAC CTTTGCGCGG CGCCCGGCGG CAAGACGATG
CAGCTCGCCG CCGCCAACTG GGCGGTCACC GCGGTCGACT CGAGCGCCAG GCGCCTCGAG
CGGCTGCGCG CCAACCTCAC GCGCACCGGC CTTGCCGCCA CAATCGTGCA AGGCGACATC
CGCACATGGG AACCCGATGC CGCGGCCGAT GCCGTGCTGC TCGACGCCCC CTGTTCGGCG
ACGGGCATTT TCCGCCGCCA TCCCGACGTG ATCCACCGCA TCGAGCCGCG ACAAATCGAA
GAAATGGCAA CGTTACAGGC CGGATTGCTA GCGCGCGCCG CGAAATGGGT CAAACCCGGC
GGCACACTCG TCTACGCGAC CTGCTCGCTC GAACGCGCCG AGGGCGAGGA TCAGGTCGCG
GCCTTTCTCG ACGCGCATCG CGGCTGGGCG ATTGACGCGG CGCGACCCGA CGAACTGGCA
ACGGGCATCA CCCCCGACAT CAACGGCTGC GTCCGTACGC TCCCCGGCCA GATCGCCGAC
GCGGGCGGAC TCGACGGCTT CTTCATCGCC CGCCTTCGTG CGCCAGACGC TTGA
|
|---|
| Protein sequence | MPRPVMADRR SSRRRPRGEA DPPGLAPRRA ALRLLDAIVR RGDPLDVAMH AAAQGLVGAD
RAFAVAIASE ALRWMTDIDA LVDGATAQPL PDDVKSRAVL RIALAQLLVL KSPGHAVVAT
ALPLVDGGPR RLVHAILSRA QKEKWELPAR ASLPPAAAER WTAQWGATMI EAAAESWSVP
PPIDLSFAAE PAPDEWPDAV ALAPRHRRLP RGQAVEAMPG FAEGGWWVQD LAASLPARLL
GAGAGRTILD LCAAPGGKTM QLAAANWAVT AVDSSARRLE RLRANLTRTG LAATIVQGDI
RTWEPDAAAD AVLLDAPCSA TGIFRRHPDV IHRIEPRQIE EMATLQAGLL ARAAKWVKPG
GTLVYATCSL ERAEGEDQVA AFLDAHRGWA IDAARPDELA TGITPDINGC VRTLPGQIAD
AGGLDGFFIA RLRAPDA
|
|---|
| |