| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_0987 |
|---|
| Symbol | |
|---|
| ID | 4081675 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | + |
|---|
| Start bp | 1013814 |
|---|
| End bp | 1014449 |
|---|
| Gene Length | 636 bp |
|---|
| Protein Length | 211 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 638009347 |
|---|
| Product | rhomboid-like protein |
|---|
| Protein accession | YP_616037 |
|---|
| Protein GI | 103486476 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.769886 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCCGC AGGACGCGCC GCTGGTCACG GGCTATGCGC TCGCCTGCGT CATCCTGTTC
GTCCTGCTCT GGATCACGGG CTTTCAGATC GAAGCGATCG TGCGCGCGGG CTTTATTCCC
GCGCGCTTCG GCCAGGAATT GATCCTGCCG CCGGGAACGC TGGTGCCCTT TGTGCTGACG
CCGCTGACGT CGGCCTTTCT GCACGGCGGG GTGCTCCACA TCGCCTTCAA CATGGTCGTG
CTGCTGTTCA TCGGCCGCCA ATTGGAAGCG CCGCTGGGCA CGAAGGCGAT GGCGGTGCTG
CTGCTCGCGG GAGCCTATGG CGGCGCGCTC GCCCAATATC TCGCCGATCC CGCCTCCGCC
GTGCCGATGA TCGGCGCGAG CGGCGCAATC TCGGCGCTCA TCGCGGTGTT CGCGCTGATT
TTCAGCCGCA CACAGGCGCC CGCGATCGGG CCGATCCCCA GCCATTGGGT GCGCGCGATC
TGGCTCGCCG CAGCGTGGAT CGGCGTTCAG GTCCTGCTGG GCTTCGCGGG CGGCGCGGGG
TTCGGCGCAA TCGCCATCTG GGCGCATGTC GGAGGGTTCC TGGCGGGCCT GCTGCTGGCG
CGGCCGCTGC TGCGCTGGCG CTTCGGGGCG CGCTGA
|
|---|
| Protein sequence | MKPQDAPLVT GYALACVILF VLLWITGFQI EAIVRAGFIP ARFGQELILP PGTLVPFVLT
PLTSAFLHGG VLHIAFNMVV LLFIGRQLEA PLGTKAMAVL LLAGAYGGAL AQYLADPASA
VPMIGASGAI SALIAVFALI FSRTQAPAIG PIPSHWVRAI WLAAAWIGVQ VLLGFAGGAG
FGAIAIWAHV GGFLAGLLLA RPLLRWRFGA R
|
|---|
| |