Gene Sala_0973 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSala_0973 
Symbol 
ID4079972 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingopyxis alaskensis RB2256 
KingdomBacteria 
Replicon accessionNC_008048 
Strand+ 
Start bp997927 
End bp998535 
Gene Length609 bp 
Protein Length202 aa 
Translation table11 
GC content68% 
IMG OID638009333 
Productbeta-Ig-H3/fasciclin 
Protein accessionYP_616023 
Protein GI103486462 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG2335] Secreted and surface protein containing fasciclin-like repeats 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value0.517899 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGCGCG CGAAGCCATT CGCTGTTCCC ACGCTTGCCC TGACCGCCGC TCTTTCGCTG 
GGTCTTGCCG CATGCGGCAG CGAATCCGAA ACGACGACCG GGACCGCGAC GGTCGGCGAT 
GCGATTGCCG TCGGCGCGAC CGGGGACGGG ATGGCCGCCG ACCGGACGAT TGCCGACAAT 
ATCGCCGCCT CGCCGATTCA CACATCGCTC GCTGCTGCAC TCACGCAGGC CGGTCTGGCG 
CAGACCTTGT CGAGCGCGGG ACCGTTCACC GTCTTTGCTC CGACCGACGC CGCCTTTACC 
CAGGTTCCGC CGGTGACGCG CGACGGCTGG ATGCGCCCGG CGCAGCGGAG CGTGCTCGCG 
GGCGTACTCA ACTATCATGT CGTCCCCGGC AAGCTCACCG CCGCCGATCT GGCCGCGCAG 
ATCGACGCCG CGGGTGGGCA ATTGACGCTG AAGACAGCCG ACGGACAGGA TCTGATGGTG 
CGCGAATCGG GCGATTCGAT CCTGCTTACC AGCGCGTCGG GCAACAAGGC GGTCGTCACG 
CAAGCCGACG TCGGGCAGGC GAACGGCGTC GTCCATGTGA TCGACGCGGT GCTGCTTCCC 
AGGACGTAG
 
Protein sequence
MSRAKPFAVP TLALTAALSL GLAACGSESE TTTGTATVGD AIAVGATGDG MAADRTIADN 
IAASPIHTSL AAALTQAGLA QTLSSAGPFT VFAPTDAAFT QVPPVTRDGW MRPAQRSVLA 
GVLNYHVVPG KLTAADLAAQ IDAAGGQLTL KTADGQDLMV RESGDSILLT SASGNKAVVT 
QADVGQANGV VHVIDAVLLP RT