Gene Sala_0930 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSala_0930 
Symbol 
ID4080483 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingopyxis alaskensis RB2256 
KingdomBacteria 
Replicon accessionNC_008048 
Strand
Start bp945354 
End bp946085 
Gene Length732 bp 
Protein Length243 aa 
Translation table11 
GC content65% 
IMG OID638009291 
Productresponse regulator receiver protein 
Protein accessionYP_615981 
Protein GI103486420 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG3279] Response regulator of the LytR/AlgR family 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.748451 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTTCAGA CCTTGCGCAC GTTGATCGTC GATGACGAAC CGCTCGCGAT CGAACGGCTC 
CAGATCCTTG CGGGGCAACA GGACGGGATT TCGCTCGTCG GCACGGCGAG CGACGGCGCC
TCGGCGCTTC GCATGGTCGA TGCGCTGGCA CCCGACCTGC TGCTCTGCGA CATCGCGATG
CCCGACCTCA ACGGGCTGGA GGTGGCGGCG GCGATCGAGC GGCTCGACAA TCCGCCCGCC
ATCGTCTTCG TCACCGCTTT CGACCGCTAT GCCGTCGCGG CGTTCGAGGT GGCGGCGGTC
GATTATCTGC TGAAACCCGT TTCCCCCGAT CGGCTGACGC GCGCCGTGTC GCGCGTGCGC
GAATGGCGCG CGGCCGAACG CCCATCGAAA CAGAAAAGCA AATGGATCAC CGAGTTCTGG
GTTCAGAACC GCGGCGAAAT GCTGCGCATC GACGCGGCGC AGGTCGATCT GATCGAGGCC
GAGCGCGACT ATATGCGCCT GCACGTCGGC GCGCGCAGCT GGCTGATCCA TCAGACGATC
AAATCGCTGG AAGCGCGGAT GAACCCTGAC CAGTTCATGC GCATCCACCG ATCGAAGATG
ATCCGGCGCG ACGGCATCGT CGGCCTGAAA CACCATGGCG ACGGCGCGTG GAGTGTCGAC
CTGGGTGAGG GCGGCGTCCA TCGCATCGGG CGCACCTACC TCCACGATGT AAAGGCGATC
ATGCACGCCT GA
 
Protein sequence
MLQTLRTLIV DDEPLAIERL QILAGQQDGI SLVGTASDGA SALRMVDALA PDLLLCDIAM 
PDLNGLEVAA AIERLDNPPA IVFVTAFDRY AVAAFEVAAV DYLLKPVSPD RLTRAVSRVR
EWRAAERPSK QKSKWITEFW VQNRGEMLRI DAAQVDLIEA ERDYMRLHVG ARSWLIHQTI
KSLEARMNPD QFMRIHRSKM IRRDGIVGLK HHGDGAWSVD LGEGGVHRIG RTYLHDVKAI
MHA