| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_0912 |
|---|
| Symbol | |
|---|
| ID | 4083122 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | + |
|---|
| Start bp | 921799 |
|---|
| End bp | 923346 |
|---|
| Gene Length | 1548 bp |
|---|
| Protein Length | 515 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 638009273 |
|---|
| Product | AMP-dependent synthetase and ligase |
|---|
| Protein accession | YP_615963 |
|---|
| Protein GI | 103486402 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.881726 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCATCCGC GCCATTTTGC GCGAAAAGCG CCCGATCGTC CAGCCATCGT CATGGCGGCA
AGCGGAGAAA CGGTCAGCTA TTCCGCGCTC GAAAATGTGG CGAATCGTGG AGCACAGCTT
TTTCGCTCAC TGGGGATAGC GACGGGTGAC ACGATCGCGC TTTGGCTCAA AAACTGCCGC
GATTATTTCG AAATCTATTG GGCGGCGCAG CGGGCCGGAC TTTATGTCTG CCCGATCGCG
ACGCATCTGA CCGTAGAGGA AGCGGCCTAT ATATTGAACG ACAGCGGCGC GTGCCTTCTG
ATCACCCATG CCGATGTAGC GGCTGCGCCG GACCTTGTCA GCGAACGTCA GCGCCTGATC
CCGGACGTGC GTCACATATT CGGCCTGGAG GCGGGAATGG ACGGATTTCC GTCATGGCGC
GCGGCGCTGA CGGGCTTTCC GTCCAAACCG ATCGCGGACG AAACCGCTGG TTATCATCTG
GTTTATTCGT CCGGCACTAC CGGACGGCCC AAGGGCATAA GGCTGCCGCT CAGCGGCGAG
GCGGCCGATG CGCCGCACAT GCTGGGCGAT CGGGTCGCCG GGCGCTATGG CGTCGGGGAG
GATAGCGTCA TCCTGTCGCC CGCACCGCTC TATCATACCG CGCCCTTGGT CTATGGCATG
GTTGCGCATC GGCTGGGCGC AACATTGATC GTCATGGACC ATTTCGATGC CGAGGACATG
TTGCGCCTGA TCGAACGCCA TCGCGTCACC TTTATCCAGA TGGTGCCGAC GATGTTCGTG
CGCCTGCTTG CGCTGCCGGG TACGACACGG GCGCAATATG ATCTCTCGTC GCTGCAAAAG
ATCGTTCATG CCGCAGCGCC TTGTCCGGTC GAGATCAAGC GCCGGATGAT CGACTGGCTC
GGCCCCATCA TCTATGAATA TTATGGCGGG TCGGAAGGCA ATGGATCGAC CTTTATCACG
CCGCAGGAAT GGCTGGAGCA TCCCGGATCG GTCGGGCGCG CCGACTGGGG AACGCTGCAT
ATTTGCGACG AGGAGGGGAA TGAGGTGCCA CCGGGCGTCG ACGGGCTGAT CTATTTTGAA
GGCGGCTGGG ATTTCCAGTA TCTGAACGAC CCCGAAAAGA CGCGTGACGC GCGACATCCG
CGACATCCGG CATGGAGCAC ACTGGGCGAC ATCGGCCATG TCGATAAGGA TGGTTATCTT
TACCTGACCG ACCGCAAGGG TTTCATGATC ATATCGGGCG GCGTGAACAT CTATCCGCAG
GAAGTCGAAA ATCTGCTGAT CACTCACCCG CGCGTCGCCG ACGCGGCCGT TATCGGCGTG
CCGAGCGCCG AGTTCGGCGA AGCGGTGAAA GCGGTCGTGC AACCGCTCGA TCCCGCCGAC
GCGACCGATG AATTTGCGGA AGAGTTGCTG CGTTTCTGCC GCGCCCGGCT GAGCCATGTG
AAATGCCCGC GATCGATCGA TTTCGACCCT GCGCTGCCCC GGCTCGACAC GGGCAAGCTT
TACAAGCGGT CGATCCGCGA CCGCTATTGG CCTGTCGCGC CGACATAG
|
|---|
| Protein sequence | MHPRHFARKA PDRPAIVMAA SGETVSYSAL ENVANRGAQL FRSLGIATGD TIALWLKNCR
DYFEIYWAAQ RAGLYVCPIA THLTVEEAAY ILNDSGACLL ITHADVAAAP DLVSERQRLI
PDVRHIFGLE AGMDGFPSWR AALTGFPSKP IADETAGYHL VYSSGTTGRP KGIRLPLSGE
AADAPHMLGD RVAGRYGVGE DSVILSPAPL YHTAPLVYGM VAHRLGATLI VMDHFDAEDM
LRLIERHRVT FIQMVPTMFV RLLALPGTTR AQYDLSSLQK IVHAAAPCPV EIKRRMIDWL
GPIIYEYYGG SEGNGSTFIT PQEWLEHPGS VGRADWGTLH ICDEEGNEVP PGVDGLIYFE
GGWDFQYLND PEKTRDARHP RHPAWSTLGD IGHVDKDGYL YLTDRKGFMI ISGGVNIYPQ
EVENLLITHP RVADAAVIGV PSAEFGEAVK AVVQPLDPAD ATDEFAEELL RFCRARLSHV
KCPRSIDFDP ALPRLDTGKL YKRSIRDRYW PVAPT
|
|---|
| |