Gene Sala_0884 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSala_0884 
Symbol 
ID4082674 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingopyxis alaskensis RB2256 
KingdomBacteria 
Replicon accessionNC_008048 
Strand
Start bp889801 
End bp890595 
Gene Length795 bp 
Protein Length264 aa 
Translation table11 
GC content63% 
IMG OID638009245 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_615935 
Protein GI103486374 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGCTCG ATAACAGCAT CGCCGCCGTC GTGACCGGGG GAGCGTCGGG ACTTGGCCGG 
GCAAGCGCCG AGGCGCTGGC CCAGAGCGGC GTCAAGGTCG CCATTTTCGA CGTGAATGAA
GAGGGCGGAC GCGCTGTCGC GGAAGCAATT GGCGGCATAT TCTGCAAGGT CGATATCACC
AGCGAGGATT CCGTCGTCGC GGGATATGAG GCGGCGCGCG CGGCGCATGG TCAGGAACGC
ATCCTTGTCC ACTGCGCGCA GATTTCAAAG GGCGGAAAGA CCGTGCGCTA TGACAAGGCG
AGCGGTGGCT ATGTTCGCTA TTCGACCGAG GATTATGCCT TTTCGGCGCA GGGCATTCTG
ATCGCCAGCT ATCGCCTCGC GTCATTGGCT GCGCTTGGCA TGGCGAATGC CGACCCGCTG
AACGATGACG GCGAGCGCGG GACGATCATC CTGACCGCTT CGGCTGCGGC GCAGGACGCG
CAGATCGGCC AGGTCGGTTA TGGTTCGCTC AAGGCGGGCG TGAACGGCCT CGTTCTGCCG
ATGGCGCGCG ACTTGATGGA CCTTGGCATA CGGGTCAACT CCATCATGCC GGGAATATTC
GCGACTCCGC CGATGCTGGC GGTCAAGGAC AGGGCGCCCG CCATCTTTGA AGGGCTCGCC
GCGTCGGTGC CTTTCCCCAA GCGGTTGGGA AAACCCGAAG AGTTCGGCAG CCTGGTGCTG
GAACTCGCGC GTAACAGCTA TTTCAACGGG CAAAATCTGC GGTTGGACGG CGCCATTCGC
ATGCCGCCGA AATAG
 
Protein sequence
MKLDNSIAAV VTGGASGLGR ASAEALAQSG VKVAIFDVNE EGGRAVAEAI GGIFCKVDIT 
SEDSVVAGYE AARAAHGQER ILVHCAQISK GGKTVRYDKA SGGYVRYSTE DYAFSAQGIL
IASYRLASLA ALGMANADPL NDDGERGTII LTASAAAQDA QIGQVGYGSL KAGVNGLVLP
MARDLMDLGI RVNSIMPGIF ATPPMLAVKD RAPAIFEGLA ASVPFPKRLG KPEEFGSLVL
ELARNSYFNG QNLRLDGAIR MPPK