Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sala_0870 |
Symbol | |
ID | 4082660 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingopyxis alaskensis RB2256 |
Kingdom | Bacteria |
Replicon accession | NC_008048 |
Strand | - |
Start bp | 876798 |
End bp | 877586 |
Gene Length | 789 bp |
Protein Length | 262 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 638009231 |
Product | short chain dehydrogenase |
Protein accession | YP_615921 |
Protein GI | 103486360 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism [R] General function prediction only |
COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCGGATT TCACCAATGC CCGGTTCGAT CTGGACGGCA AGGTCGCCAT CGTCACCGGC GCGGGCGGGC GCGGCAACAG CATCGGACGC GCCTATGCCG TCGGCCTCGC CAATGCCGGG GCGAGCGTCG TGGTCGCCGA TCTGAACAAG GAAGGCGCCG AGCGCGTCGC GGCCGAAATC AACGATGGCG GCGGCACCGC GCTCGCGATT CAGGTCGATA TCGCCGACGA AGCATCGGTT GCGGCAATGA TGGAGGCAAC CCGGTCGGCT TTTGGCGGAC TGGACATTCT GGTCAACAAT GCGGCGTTGA TGGTCGAAGC CGTCGGGACG CCCGCGATCC AGACGAGCAT CGCCGATTTC GAACGCTTGA TGCGCGTGAA CCTTACCGGT GCGCTGATCT GTTCAAAGGC CGCCGTCCCG CTGTTTCAGG CGCGCGGCGG CGGCAAGATC GTCAACCAGC TGTCCGCTGG CGCTTTTCCC GCGCAAACGC CCTATGGCAT CAGCAAGGTC GCCCTGTTGG GGCTGACCAC GACGCTTGCC ACCGAACTCG GACGGATGAA CATCAACGTC AATGCGATTG CGCCGGGCAT GACCATGTCG GACGCGGGCA AGGCACTGAC CCCCGAGGAC AGCCCCTTCG TCCAGGCCGC GATGGCGCGC GTCGTCAAAC AGCCGCGCGG CGAGCCCCAG GATCTGGTCG GCGCCCTCCT GCTCCTTTGC TCGCCCGCGG GCGACTGGAT CACGGGGCAG GCGCTGAACG TCGATGGCGG CTTCATCATG CGGAATTGA
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Protein sequence | MPDFTNARFD LDGKVAIVTG AGGRGNSIGR AYAVGLANAG ASVVVADLNK EGAERVAAEI NDGGGTALAI QVDIADEASV AAMMEATRSA FGGLDILVNN AALMVEAVGT PAIQTSIADF ERLMRVNLTG ALICSKAAVP LFQARGGGKI VNQLSAGAFP AQTPYGISKV ALLGLTTTLA TELGRMNINV NAIAPGMTMS DAGKALTPED SPFVQAAMAR VVKQPRGEPQ DLVGALLLLC SPAGDWITGQ ALNVDGGFIM RN
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