Gene Sala_0870 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSala_0870 
Symbol 
ID4082660 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingopyxis alaskensis RB2256 
KingdomBacteria 
Replicon accessionNC_008048 
Strand
Start bp876798 
End bp877586 
Gene Length789 bp 
Protein Length262 aa 
Translation table11 
GC content66% 
IMG OID638009231 
Productshort chain dehydrogenase 
Protein accessionYP_615921 
Protein GI103486360 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCGGATT TCACCAATGC CCGGTTCGAT CTGGACGGCA AGGTCGCCAT CGTCACCGGC 
GCGGGCGGGC GCGGCAACAG CATCGGACGC GCCTATGCCG TCGGCCTCGC CAATGCCGGG
GCGAGCGTCG TGGTCGCCGA TCTGAACAAG GAAGGCGCCG AGCGCGTCGC GGCCGAAATC
AACGATGGCG GCGGCACCGC GCTCGCGATT CAGGTCGATA TCGCCGACGA AGCATCGGTT
GCGGCAATGA TGGAGGCAAC CCGGTCGGCT TTTGGCGGAC TGGACATTCT GGTCAACAAT
GCGGCGTTGA TGGTCGAAGC CGTCGGGACG CCCGCGATCC AGACGAGCAT CGCCGATTTC
GAACGCTTGA TGCGCGTGAA CCTTACCGGT GCGCTGATCT GTTCAAAGGC CGCCGTCCCG
CTGTTTCAGG CGCGCGGCGG CGGCAAGATC GTCAACCAGC TGTCCGCTGG CGCTTTTCCC
GCGCAAACGC CCTATGGCAT CAGCAAGGTC GCCCTGTTGG GGCTGACCAC GACGCTTGCC
ACCGAACTCG GACGGATGAA CATCAACGTC AATGCGATTG CGCCGGGCAT GACCATGTCG
GACGCGGGCA AGGCACTGAC CCCCGAGGAC AGCCCCTTCG TCCAGGCCGC GATGGCGCGC
GTCGTCAAAC AGCCGCGCGG CGAGCCCCAG GATCTGGTCG GCGCCCTCCT GCTCCTTTGC
TCGCCCGCGG GCGACTGGAT CACGGGGCAG GCGCTGAACG TCGATGGCGG CTTCATCATG
CGGAATTGA
 
Protein sequence
MPDFTNARFD LDGKVAIVTG AGGRGNSIGR AYAVGLANAG ASVVVADLNK EGAERVAAEI 
NDGGGTALAI QVDIADEASV AAMMEATRSA FGGLDILVNN AALMVEAVGT PAIQTSIADF
ERLMRVNLTG ALICSKAAVP LFQARGGGKI VNQLSAGAFP AQTPYGISKV ALLGLTTTLA
TELGRMNINV NAIAPGMTMS DAGKALTPED SPFVQAAMAR VVKQPRGEPQ DLVGALLLLC
SPAGDWITGQ ALNVDGGFIM RN