| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_0860 |
|---|
| Symbol | |
|---|
| ID | 4079996 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | - |
|---|
| Start bp | 867910 |
|---|
| End bp | 869205 |
|---|
| Gene Length | 1296 bp |
|---|
| Protein Length | 431 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 638009221 |
|---|
| Product | acyl-CoA dehydrogenase-like protein |
|---|
| Protein accession | YP_615911 |
|---|
| Protein GI | 103486350 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1960] Acyl-CoA dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.0816126 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCAACT TTCGCATCGA ACCGGACTTG CAGGCGAGGC TGGACTGGAT GGCAGCGTTT
GTCCGCCGCG AATGCGAGCC GATGGACATG CTGTTCCCCG GTCACGGCGC TCCCTATGAC
GTAACCGACC GCAAGGCGCG CGCGCATCTG AAACCATTGC AAAAGGAGGT GAAGGCGCAG
GGATTGTGGG CCTGTCATCT GGGCGCCGAG CTGGGCGGAC CCGGATATGG TCAACTGACG
CTGGCGCTGA TGAACGAACT TCTGGGCCGC AGCTATTGGG CGCCCACCAT ATTCGGCACC
GCCGCGCCCG ATACGGGGAA CAGCGAAATC CTGGCGATGT TCGGCACCGA CGAGCAGAAG
GCCCGCTACC TGAAGCCGCT GATCGACGGT GAAATCGTAT CGACCTTTTC GATGACCGAA
CCGCAGGCCG GGGCCGATCC CAAGGAGTTC ACCTGCCGCG CGTGGCGCGA GGGCGACGAG
TGGGTGATCG AGGGAGAGAA ATGGTTCTCC TCCAATGCGC GCTTCGCCGC CTTTCTCATC
GTGATGGTCG TGACCAATCC CGAAAACCCG CCGCACGGGC GAATGTCGAT GCTGATCGTG
CCCGCCGATG CGCCCGGACT GGAATTCATC CGCCATTCCC AGACGATGGG GGATCGCCGG
GGCGACGACG ACGGCATTCA CGCCTATATC CGTTATAATC GCGTGCGGGT TCCACTGGAC
GCGATGCTGG GCAACCCCGG CGAGGGGTTC AAGGTCGCGC AGGCGCGGCT GGGCGGCGGC
CGTGTCCACC ACGCCATGCG AACGGTCGGC AAATGCCAGC GCGCGATCGA CATGATGCTG
GAACGCGCGG TCTCACGCCA CACCCAGGGC AAGCAGCTTG GCGAACATCA GTTCGTGCAG
GGAGCGATCG CCGATTCGAT CATCGAGCTG GAACAGTTCC GCCTGCTGGT GCTCAAGACC
GCGTGGATCA TCGATGAGGT GGAAAGCGGT CGCGAGCCCC ACGGCGCCGC GCGCACGCAT
ATCGCGATGT GCAAGGTGCA GATGGCAAAA GTCTGTCACG ACATCGTCCA GCGCGCGATC
CAGATGCACG GAAGCCTGGG CATGACGCTC GAAACGCCGC TCGCCGATAT GTGGATGGGC
CTTCCCGCCC TCGCCCTGGC CGACGGACCA ACCGAGGTGC ACAAGGTACA GGTCGCCAAA
GCTCATCTGA AGAATGCAAC GCGCGCATCG GGCCTGTTTC CCAGCGAACA TATACCGACG
CGGCTGGCAG CGATCCGGGA AAGGAACACG GCATGA
|
|---|
| Protein sequence | MINFRIEPDL QARLDWMAAF VRRECEPMDM LFPGHGAPYD VTDRKARAHL KPLQKEVKAQ
GLWACHLGAE LGGPGYGQLT LALMNELLGR SYWAPTIFGT AAPDTGNSEI LAMFGTDEQK
ARYLKPLIDG EIVSTFSMTE PQAGADPKEF TCRAWREGDE WVIEGEKWFS SNARFAAFLI
VMVVTNPENP PHGRMSMLIV PADAPGLEFI RHSQTMGDRR GDDDGIHAYI RYNRVRVPLD
AMLGNPGEGF KVAQARLGGG RVHHAMRTVG KCQRAIDMML ERAVSRHTQG KQLGEHQFVQ
GAIADSIIEL EQFRLLVLKT AWIIDEVESG REPHGAARTH IAMCKVQMAK VCHDIVQRAI
QMHGSLGMTL ETPLADMWMG LPALALADGP TEVHKVQVAK AHLKNATRAS GLFPSEHIPT
RLAAIRERNT A
|
|---|
| |