| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_0859 |
|---|
| Symbol | |
|---|
| ID | 4079995 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | - |
|---|
| Start bp | 867167 |
|---|
| End bp | 867913 |
|---|
| Gene Length | 747 bp |
|---|
| Protein Length | 248 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 638009220 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_615910 |
|---|
| Protein GI | 103486349 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.715574 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGCCCG ATCCGCTGTT CGATTTCACC GGAAAGGTCG CGCTCGTCAC CGGCGGGTCG
CGCGGGCTTG GCTATCGGAT GGTAAAGGCG TTTGCGGAGC GCGGCGCCGA CGTCATCGTC
GCCAGCCGCA AGCTGGACAA TTGCGAAACC ATTGCCGAAG AATGCCGCGC GCTTGGTCGC
AAAGCCCTGG CCCACAGTGC CCATTGCGGC CGCTGGGACG AGATCGACGG ATTGATCGCC
GCGTCCTACG CCGCATTCGG GCGCGTCGAC ATTCTGGTCA ACAATGCCGG AATGTCGCCG
TCCTGCGCCA GCCACGAAAT ACCGGAAAAG CTGTTCGATT CGGTGATGAA CCTGAACTTC
AAGGGTCCGT TCCGCCTCGC GAGCCAGATC GCGCACCGGA TGAGCGAAGG CGATGGCGGT
TGTATCATCA ACGTCAGCTC GACCGGGGCA TTGATGGCGC TGCCGAAAGT CGTGCCCTAT
GGCGCGGCAA AGGCGGCGCT CAATGCGATG ACCGTGTCGC TCAGCCGCGA ATATGGCCCG
AAAGTGCGGG TGAACACGAT CAGCCCCGGC CCCTTTCTGA CCGACATCGC GGACGCCTGG
GAACCATGGA AGCGGGAGGT GCAGCCCGTG GCCCTGGGAC GCCCCGGCCG CCCCGAGGAA
ATCGTCACCG CCGCACTGAT GCTCGCGAGC CCCTCATCCT CTTATACCAC CGGCGCGCTC
GTCCGCGTGG ACGGGGGGCA GCGCTGA
|
|---|
| Protein sequence | MTPDPLFDFT GKVALVTGGS RGLGYRMVKA FAERGADVIV ASRKLDNCET IAEECRALGR
KALAHSAHCG RWDEIDGLIA ASYAAFGRVD ILVNNAGMSP SCASHEIPEK LFDSVMNLNF
KGPFRLASQI AHRMSEGDGG CIINVSSTGA LMALPKVVPY GAAKAALNAM TVSLSREYGP
KVRVNTISPG PFLTDIADAW EPWKREVQPV ALGRPGRPEE IVTAALMLAS PSSSYTTGAL
VRVDGGQR
|
|---|
| |