| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_0803 |
|---|
| Symbol | |
|---|
| ID | 4080353 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | - |
|---|
| Start bp | 809791 |
|---|
| End bp | 810300 |
|---|
| Gene Length | 510 bp |
|---|
| Protein Length | 169 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 638009164 |
|---|
| Product | putative ISRm2011-2 transposase protein |
|---|
| Protein accession | YP_615856 |
|---|
| Protein GI | 103486295 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG3335] Transposase and inactivated derivatives |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.00248084 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGTCTTCA TCGACGAGAC CTGGGCCAAG ACCAACATGA CCCGTACCCA TGGCTGGGGC
ACGAAGGGCG AGCCGCTGAT CGACAAGGTG CCGCATGGAC ACTGGAAGAC GCTCACCTTT
ATCGCTGGTC TCAGGCACGA CGGGATCGTC GCCCCCTGCG TGCTCGACGG GCCGATCAAC
GGGACAAGCT TCACCGCCCG GGTCGAGCAG TTCCTGATCC CCGAACTGGA ACCAGGCAGC
ATCGTCGTCC TCGACAATCT CGGCAGCCAC AAAGGCAGCC GCGTGCGCAA ACTGCTCCGG
GCGGCGGGCA TCAAGATGTT CTTCCTGCCA CCTTACTCGC CCGACCTCGA TCCGATCGAG
AAGATGTTCT CCAAACTCAA GCGCCTGCTG CGAAAAGCCA ACGAACGAAC CGTCGAGCCC
ACTTGGCGGC GCATCGGCAA ACTGCTCGAC CGCTTCCCTC CAAACGAATG TGCCAACTAC
ATCAGAGACG CCGGATATGC CTCAATCTAA
|
|---|
| Protein sequence | MVFIDETWAK TNMTRTHGWG TKGEPLIDKV PHGHWKTLTF IAGLRHDGIV APCVLDGPIN
GTSFTARVEQ FLIPELEPGS IVVLDNLGSH KGSRVRKLLR AAGIKMFFLP PYSPDLDPIE
KMFSKLKRLL RKANERTVEP TWRRIGKLLD RFPPNECANY IRDAGYASI
|
|---|
| |