| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_0735 |
|---|
| Symbol | |
|---|
| ID | 4081355 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | - |
|---|
| Start bp | 740222 |
|---|
| End bp | 740860 |
|---|
| Gene Length | 639 bp |
|---|
| Protein Length | 212 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 638009093 |
|---|
| Product | TetR family transcriptional regulator |
|---|
| Protein accession | YP_615788 |
|---|
| Protein GI | 103486227 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1309] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.177644 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.315987 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTCGGCG GGCGAGATCA GAGGAACGAG CAAATGGCCG CCAAGCTTAA ACACAGGCAA
CCGATAATCG ATGCCGCAGT GCAGCTATTT CGCCAACGCG GATATGCCGC TACCGGTCTG
AACGATCTGG TATTGGCGAG CGGCTCGCCC AAGGGTTCGA TGTATTACTA TTTCCCCGAT
GGCAAGCCGA CGATTGCGGC CGCCGCGGTG GAAGAAGCCG GGCGCCGGGT GATGGAGACG
ATCGAGGACA TCGCCGCCAG GACCGGCTCA ACCGCCGATC TGCTGGTCGA GCATGCACGA
CTGCTTGGCC AATGGATGGA AAAGTCCGGC TTCCGCGATG GCTGCCCGAT GACAACCGTC
CTGCTGGAAC TGGCACCGGA CGACCGCATC GTGACCGAAG CTGGCCGCCG TGCCTTTGCC
GCCCGCTTGC GGATTCTGGG GGACAAGCTG ATCGAAGACG GCTTCGAGGC GAGGGAGGCG
GAGGCGATGG CGCTCCTCTG CACAAATGCT TTGCAAGGAA GCCTCGTGAT GGCGCGGGTC
GAATGCAGCC GCGCACCGAT CGAGCAGACC GCCGCCCAAC TGGCCGCGAT CCTCAAGGTC
AAAAGCGAAG CACGCCGCTC TAACGCCATT CAGGACTGA
|
|---|
| Protein sequence | MVGGRDQRNE QMAAKLKHRQ PIIDAAVQLF RQRGYAATGL NDLVLASGSP KGSMYYYFPD
GKPTIAAAAV EEAGRRVMET IEDIAARTGS TADLLVEHAR LLGQWMEKSG FRDGCPMTTV
LLELAPDDRI VTEAGRRAFA ARLRILGDKL IEDGFEAREA EAMALLCTNA LQGSLVMARV
ECSRAPIEQT AAQLAAILKV KSEARRSNAI QD
|
|---|
| |