| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_0718 |
|---|
| Symbol | rimO |
|---|
| ID | 4081807 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | - |
|---|
| Start bp | 724305 |
|---|
| End bp | 725672 |
|---|
| Gene Length | 1368 bp |
|---|
| Protein Length | 455 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 638009077 |
|---|
| Product | ribosomal protein S12 methylthiotransferase |
|---|
| Protein accession | YP_615772 |
|---|
| Protein GI | 103486211 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0621] 2-methylthioadenine synthetase |
|---|
| TIGRFAM ID | [TIGR00089] RNA modification enzyme, MiaB family
[TIGR01125] MiaB-like tRNA modifying enzyme YliG, TIGR01125 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAACCA AGATTCTTCC TTCCCAGCCG AAGGTCGGCA TGGTGTCGCT CGGCTGCCCC
AAGGCGCTCG TCGACAGCGA ACGGATTCTG ACCAAGCTGC GCGCCGATGG CTATGGCCTT
TCGCCCGACT ATGCGGGCGC CGATGTCGTG CTCGTCAACA CCTGCGGCTT CCTCGACTCG
GCGAAGGAAG AAAGCCTTGA GGCGATCGGC GAGGCGATGG CCGAAAACGG CCGCGTCATC
GTCACCGGCT GCATGGGCAA GGAGGCCGAC GTCATCCGCG CGCGATTCCC GAACGTGCTC
GCGGTCACCG GCGCGCATCA GTACGAACAG GTCGTCGAAG CCGTCCACGA CGCCGCGCCG
CCGACGCAGG GCCCGTTCGT CGACCTCGTT CCCGAGGGCG GGCTGAAACT CACCCCGCGC
CACTACAGCT ATCTGAAGAT CTCCGAAGGC TGCAACCACA GCTGCGCCTT CTGCATCATC
CCAGATCTGC GCGGCAAACT CGTCAGCCGC CGTATCGACG CGGTGCTGCG CGAGGCTGAA
AAGCTCGTCG CCGCGGGGAC GAAGGAATTG CTCGTCATCA GCCAGGACAC GTCGGCTTAC
GGCGTCGATA TCCGCCACGA CCCGCGCCAG TGGCACGGCC GCGAAATCCG CGCGCACATG
ACCGACCTCG CGCGCGAACT CGGGCAGCTT CGGACCAGCG AAGGCCGCGC GCCGTGGGTG
CGCCTCCACT ATGTCTATCC CTACCCGCAC GTCGATGCGG TCATCCCGCT GATGGCCGAG
GGACTGCTGA CGCCCTATCT CGACATCCCC TTCCAGCACG CGAGCCCCAG CGTCCTCAAG
CGCATGAAGC GCCCCGCGAA CGAAGCGAAG GTGCTCGAAC GGCTGAAGAG CTGGCGCGCC
ATCGCCCCCG ACATCGCGAT CCGTTCGAGC TTCGTCGTCG GCTTCCCCGG CGAGACCGAA
GCCGATTTCC AGTATCTCCT CGACTGGCTC GAAGAAGCGC AGCTCGACCG CGTCGGCGCC
TTCCGCTTCG AACCCGTCGC CGGCGCGCAG GCCAACGCCC TGCCCGAGCC GGTCCCCGAC
GAGGTCAAGG AAGAACGCTA TCAGCGCATC ATGGCGAAAA CCGCCGCGAT CAGCGCCGCG
AAGCTTGAAG CCAAGATCGG CCGCACGCTA CCGGTGATCA TCGACGAAGT CGGCGAGGCG
GACGAAGACG GTAGCATCGG CGCGACCGGC CGGTCACAGG CCGACGCCCC CGAAATCGAC
GGCCACGTCT ATCTGCGCGA CGTCGCGGCG ACACTGAAAG CCGGCGACAT CGTCGATGTC
GAAATCGAGG ACGCCGACGA GCATGACCTG TTCGGCGTGG TAACCTGA
|
|---|
| Protein sequence | MTTKILPSQP KVGMVSLGCP KALVDSERIL TKLRADGYGL SPDYAGADVV LVNTCGFLDS
AKEESLEAIG EAMAENGRVI VTGCMGKEAD VIRARFPNVL AVTGAHQYEQ VVEAVHDAAP
PTQGPFVDLV PEGGLKLTPR HYSYLKISEG CNHSCAFCII PDLRGKLVSR RIDAVLREAE
KLVAAGTKEL LVISQDTSAY GVDIRHDPRQ WHGREIRAHM TDLARELGQL RTSEGRAPWV
RLHYVYPYPH VDAVIPLMAE GLLTPYLDIP FQHASPSVLK RMKRPANEAK VLERLKSWRA
IAPDIAIRSS FVVGFPGETE ADFQYLLDWL EEAQLDRVGA FRFEPVAGAQ ANALPEPVPD
EVKEERYQRI MAKTAAISAA KLEAKIGRTL PVIIDEVGEA DEDGSIGATG RSQADAPEID
GHVYLRDVAA TLKAGDIVDV EIEDADEHDL FGVVT
|
|---|
| |