| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_0625 |
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| Symbol | |
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| ID | 4082561 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingopyxis alaskensis RB2256 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008048 |
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| Strand | - |
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| Start bp | 635390 |
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| End bp | 638203 |
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| Gene Length | 2814 bp |
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| Protein Length | 937 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 638008984 |
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| Product | DNA polymerase I |
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| Protein accession | YP_615679 |
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| Protein GI | 103486118 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0258] 5'-3' exonuclease (including N-terminal domain of PolI)
[COG0749] DNA polymerase I - 3'-5' exonuclease and polymerase domains |
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| TIGRFAM ID | [TIGR00593] DNA polymerase I |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.480617 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCGAGA AGAATCACCT CTATCTGGTC GATGGCTCCA GCTATATCTT TCGCGCCTAT
CACCGCCTGC CGCCGCTGAC CAACCCCAGG GGCGTGCCGG TCGGTGCGGT TTACGGCTAC
ACCACGATGC TGTGGAAGCT CGCGAAGGAT CTGCACGACG CGGACGGGCC GACGCACCTT
GCGGTGATCC TCGACCATTC GAGCGAGTCG TTCCGCAACG AGATTTACGA CCAGTATAAG
GCGAACCGCC CCGACCCGCC CGAGGATCTG GTCCCGCAAT TCCCGCTGAT CCGCGACGCG
ACGCGCGCTT TCTCCCTGCC GTGCATCGAG ATGGAGGGGT TCGAGGCCGA CGATCTGATT
GCGAGCTATA CCGAAGCTGC GGTGCGCGAA GGGTGGGACG TCACCATCGT GTCGTCGGAC
AAGGATCTGA TGCAATTGAT CCGCGAGCCC GCAGGCGGCC CGCATGTCGA CATGCTCGAC
ACGATGAAGA ATGTCCGGCT GGGGATCGAC GCGGTGAACG AGAAGTTCGG CGTCACCCCC
GATCTGGTCG GCGACGTGCT CGCGCTGATG GGCGACAGCG TCGACAATGT TCCCGGCGTG
CGCGGCGTGG GGCCGAAGAC CGCGACGAAG CTGATCCAGG AATATGGCAG CCTGACCGCC
GCGCTCGACG GCGCCGAAAC GATGAAGCCC GGCAAGCTGC GCGAGAATCT GATCGAACAT
CGTGCGATGG CGGAGCTTTC GCGCATCCTG GTCGACCTCA AGCGCGATTG TCCGCTGCCG
GACCCGCTCG ACGCGCTCAA GCTTGGCGCG ATCCCGCCCG AACCGCTCAA GCTGTTCCTC
GACGAACATG GTTTCCGTTC GCTGTCGGCG AAGCTCGATC TCGGCACCGC GCCCGCGGGG
CCGCCGACGC TGCCGCGTGC GGGGGCAGCG CCCGTGACGC CCGCTGCCGA TGCGCCTTCG
ACCCCGACAT TGCCGTCGAT GCCGCCGATC GACCGCGCGC GCTATGAAAC GGTGACGACG
ATCGAGGCGC TCGACCGCTG GATCGCCGAC GCGCGCGCGG CGCATGTCGT CGCGGTCGAC
ACCGAGACCG CGAGCCTGGA CAGCGTTACC GGGCGGCTCG TCGGGGTGAG CCTGTCGACC
GGGGCGGGCA AGGCCTGTTA CATTCCGCTC GGTCACGGCG GCACCGACAT GTTCGCCGAA
AAGCCCGAAC AGATCGCGAT GGGCGACGCG CTGGAGCGCC TCGGCGCGCT GTTTGCCGAC
GATGCGGTGC TCAAGGTCGG GCACAACCTC AAATATGACA TTGGCGTGCT CGCGCAGCAC
GGGGTCACCG TCGCGCCCTA TGACGACACG CTGCTGATGA GCTTTGCGCT CGACGCGGGC
AAGCACCAGC ACGGGCTCGA CGAGCTTGCC AAGCTGCACC TCGACCATGT CTGCCTGTCG
TTCAAGGACG TGTGCGGCAC TGGCAAGTCG CAGATCAGCT TCGCCGAAGT GCAACTCGAC
CGCGCGACCG AATATGCCGC CGAAGATGCC GAGGTCGCGT GGCGGCTGTG GAAGCTGCTC
AAGCTCCGCC TGCCGCTCGA AGGCGGGACG CGCGTCTACG AGATGGTCGA CAGGCCGCTG
GCCGCGGTCG TCGAGGGCAT GGAACGCGCC GGCATCATGG TCGACCGCGA CTATCTGGCC
AAGCTGTCGG GCGAGTTTGC GAACGAGATG CTGCGCATCG AGGGCGAAAT CCACGCCCTC
GCAGGTCAGC CCTTTGCGAT CGGCAGCCCC AGGCAGCTCG GCGAAATCCT GTTCGACAAG
ATGGGCCTCA AGGGCGGGCG CAAGGGCAAG TCGGGCGACT GGTCGACCGA CCAGAATGAG
CTGGAACGGC TCGAACGCGA CGGCGTACCG ATTGCGCGCA AAATCCTCGA ATGGCGCCAG
CTCGCCAAGC TGAAATCGAC CTATACCGAC GCCTTGCAGG AACAGGTGAA CGCCACGACC
GGGCGCGTCC ACACCAGCTA CAGTCTCGTC GGCGCGCAGA CGGGGCGACT GTCATCGACC
GATCCGAACC TTCAGAATAT CCCGATCCGC ACCGAAGTCG GGCGGCAGAT CCGCGACGCC
TTCATCGCCG CGCCGGGCCA TGTGCTGATT GCCGCCGACT ATAGCCAGAT CGAATTGCGG
CTCGCGGCGC ATATGGCCGA TGTCCCCGAG CTGAAAGAGG CCTTCGCCCG CGGCGACGAC
ATTCACGCCG CGACCGCGAT CGAGCTGTTC GGCGAGGTCA ACCGCGACAC GCGCGGCAAG
GCGAAGACGG TCAATTTCTC GATCCTCTAT GGCATTTCGC GCTGGGGTCT CGCCGGACGG
CTCGAAATCA CCCCCGACGA GGCGCAGGCG CTCATCAGCC GCTATTTCGA GCGCTTCCCC
GGCATCTCGG ACTATATCAG CGACACGCTC GAAACCGCGC GCGCGCGCGG CTATACCGAG
ACCTTGTTCG GCCGGAAGAC CTGGTTCCCG CGCATCAAGG CGGCGAACCA GAACGAGCGC
GCGGGAAGCG AGCGCGCCGC GATCAACGCG CCGATCCAGG GCACGAGCGC CGACCTGATC
AAGCGCGCGA TGGCGCGGAT GCCGGGCGCG CTTGCGGATG CGGGCCTCGC GGATGTCAAG
ATGCTGCTTC AGGTCCATGA CGAACTGGTG TTCGAGGCGC CCGAGGACAA GGCCGCAGCG
GCGGGCGAGG TGATCCGCGC GGTGATGATG GGCGCCGCCG AGCCGGCGCT CAAACTCTCG
GTCCCGCTGG AGGTCGAGAT CGGCACAGGT AAGAGCTGGG GCGACGCGCA TTGA
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| Protein sequence | MSEKNHLYLV DGSSYIFRAY HRLPPLTNPR GVPVGAVYGY TTMLWKLAKD LHDADGPTHL
AVILDHSSES FRNEIYDQYK ANRPDPPEDL VPQFPLIRDA TRAFSLPCIE MEGFEADDLI
ASYTEAAVRE GWDVTIVSSD KDLMQLIREP AGGPHVDMLD TMKNVRLGID AVNEKFGVTP
DLVGDVLALM GDSVDNVPGV RGVGPKTATK LIQEYGSLTA ALDGAETMKP GKLRENLIEH
RAMAELSRIL VDLKRDCPLP DPLDALKLGA IPPEPLKLFL DEHGFRSLSA KLDLGTAPAG
PPTLPRAGAA PVTPAADAPS TPTLPSMPPI DRARYETVTT IEALDRWIAD ARAAHVVAVD
TETASLDSVT GRLVGVSLST GAGKACYIPL GHGGTDMFAE KPEQIAMGDA LERLGALFAD
DAVLKVGHNL KYDIGVLAQH GVTVAPYDDT LLMSFALDAG KHQHGLDELA KLHLDHVCLS
FKDVCGTGKS QISFAEVQLD RATEYAAEDA EVAWRLWKLL KLRLPLEGGT RVYEMVDRPL
AAVVEGMERA GIMVDRDYLA KLSGEFANEM LRIEGEIHAL AGQPFAIGSP RQLGEILFDK
MGLKGGRKGK SGDWSTDQNE LERLERDGVP IARKILEWRQ LAKLKSTYTD ALQEQVNATT
GRVHTSYSLV GAQTGRLSST DPNLQNIPIR TEVGRQIRDA FIAAPGHVLI AADYSQIELR
LAAHMADVPE LKEAFARGDD IHAATAIELF GEVNRDTRGK AKTVNFSILY GISRWGLAGR
LEITPDEAQA LISRYFERFP GISDYISDTL ETARARGYTE TLFGRKTWFP RIKAANQNER
AGSERAAINA PIQGTSADLI KRAMARMPGA LADAGLADVK MLLQVHDELV FEAPEDKAAA
AGEVIRAVMM GAAEPALKLS VPLEVEIGTG KSWGDAH
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