| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_0555 |
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| Symbol | |
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| ID | 4081445 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingopyxis alaskensis RB2256 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008048 |
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| Strand | - |
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| Start bp | 569650 |
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| End bp | 570342 |
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| Gene Length | 693 bp |
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| Protein Length | 230 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 638008913 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_615609 |
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| Protein GI | 103486048 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.177644 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.10555 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCAACCC ATATCCTGAT CACCGGCGCG AGCCGCGGCA TCGGCGCGGC GATCGCCGAA
GCGCTGACCT CCACCGCAAC GAAGATCGTC GCCCTGTCGA GCGCCGACGG CGACCTCGGC
GACCCGGCAA CCCCCGACCG GCTGTGGCAC ACGAGCCTCG ACCAACTGGA TGGCCGTATC
GACATACTCG TCAACAACGC CGGGGTGTTC GAGGCGAACC CCCTCGACGC GACCGATGCC
GAATGGCTCG CGAACTGGAA CCGCACGATG CAGATAAATC TGACCGCGAG CGCGCAGCTG
TGCCGCCGCG CGGTGTTGCA CTGGCAGGCG CGCCAATCGG GCGGCCGCAT CGTCAATATC
GCGAGCCGCG CCGCCTATCG CGGCGACAGC CCCGTGCACT GGCATTATGC GGCGTCGAAA
GCGGGCATGG TCGCGATGAC CAAGACGATC GCGCGCGCTT ATGCCAGGGA TGGTATCCTC
GCCTTTGCCA TCTGCCCCGG CTTCACGATG ACGGGCATGG CCGACGAATA TCTGGAAAGC
CGCGGCGGCG AGAAATTGCT CGCCGACATT CCGCTGGGCC GTGTCGCGAT GCCGGACGAG
GTCGGCGAAA TGGCGCGCTG GTGCGCGATG CAGGCGCCCG CGTCGATGAC CGGCGCGATA
CTCGACATCA ACGGCGCCAG CTATGTCCGC TGA
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| Protein sequence | MPTHILITGA SRGIGAAIAE ALTSTATKIV ALSSADGDLG DPATPDRLWH TSLDQLDGRI
DILVNNAGVF EANPLDATDA EWLANWNRTM QINLTASAQL CRRAVLHWQA RQSGGRIVNI
ASRAAYRGDS PVHWHYAASK AGMVAMTKTI ARAYARDGIL AFAICPGFTM TGMADEYLES
RGGEKLLADI PLGRVAMPDE VGEMARWCAM QAPASMTGAI LDINGASYVR
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