| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_0549 |
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| Symbol | |
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| ID | 4081439 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingopyxis alaskensis RB2256 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008048 |
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| Strand | + |
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| Start bp | 563107 |
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| End bp | 565251 |
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| Gene Length | 2145 bp |
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| Protein Length | 714 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 638008907 |
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| Product | DNA ligase, NAD-dependent |
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| Protein accession | YP_615603 |
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| Protein GI | 103486042 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.183807 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.14967 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGGACG TCGGATCGCT GACCGAAGCC GAGGCCGCGA ACGAGTTGAT GCGGCTGGCG
AAACAGATCG CGCATCACAA CAAGCTCTAT CATGCCGAGG ACAGCCCGGA GATTTCGGAC
GCCGACTATG ACGCGCTGGT CCGCCGCAAT ACGGCGATCG AGGAGGCTTT TCCGCATCTG
ATCCGTGCCG ATAGCCCCAA CCGGCTGGTC GGCGCCGCGG TCGAGGCGTC GCCGCTGGCG
AAGGTGACAC ACGCGCAGCG GATGATGAGC CTCGACAACG CCTTTGCCGC CGAGGATGTC
GAGGAGTTCG CAGCGCGCGT GCGGCGCTTT CTCAATCTGG ACGAAGGCGA GCCGCTCGCG
TTCACCGCGG AGGACAAGAT CGACGGCCTG TCCTGTTCGC TGCGGTATGA AAAGGGCGTG
CTGGTGCAGG CTGCGACGCG CGGCGACGGG ACGGTGGGCG AGGATGTCAC GCCGAACGTG
CGGACGATTG CCGACATTCC GCAGAATCTG AAAGGCGACA TTCCCGACAT CTTCGAGATT
CGCGGCGAAG TCTATATGGC GAAGGCCGAT TTTGCGGCGC TCAACGCGCG GCTGCTCGCC
GAAGCCGACG ATCCCGACAA GGCGCGCCAG TTCGCCAATC CGCGCAACGC CGCCGCGGGG
TCGCTGCGCC AGAAAGACGC AAGCGTCACC GCGTCGCGCC CGCTGCGTTT CCTCGCGCAT
GGCTGGGGTG AGGTCAGCGC GCTGCCTGCC GACACCCAAT ATGCGGTGAT GAAGGCGATC
GAAAGCTGGG GGGTGCCGGT GTCGCCGCTG CTGAAGCGCT GCGACGGGGT TGCCGACCTG
CTGGACCATT ACCGGATGAT CGAGGCCGAG CGGGCCGAAC TGCCCTATGA CATCGACGGC
GTCGTCTACA AGGTCGACCG GCTCGACTGG CAGGCGCGGC TGGGCTTCGT CGCCAGGGCG
CCGCGCTGGG CGATTGCGCA TAAGTTTCCG GCCGAACGCG CGCAGACGAC GCTGGAGGCC
ATCGACATCC AGGTCGGACG CACGGGGAAG CTGACGCCGG TGGGGCGGCT CACCCCCGTC
ACCGTCGGCG GCGTCGTCGT GTCGAACGTG ACGCTCCACA ACCGCGACGA GATCGCGCGC
CTCGGCGTGC GTCCGGGCGA TCGCATCATT GTCCAGCGCG CGGGCGACGT GATCCCGCAA
GTGGTCGAAA ATCTGACCCG CGACGAGCCG CGCGAGCCAT ATGTCTTTCC CGATCATTGC
CCGGTGTGCG GCAGCGAGGC GGTCGCCGAA GATGGCGAGG TCGATGTGCG CTGCACCGGC
GGGCTGATTT GCAACGCGCA GAAGTTCGAG CGGCTTCGCC ATTTCGTCAG CCGCGGCGCG
CTCGACATCG AGGGGCTGGG CGAAAAGAGT ATCGCCGAGT TTCTGGAGCT TGGCTGGCTC
GAAAAGGGGC CGGCCGACAT TTTTCGCCTG AAAAGCCACC GCGAAGAGCT GCTCGCGCGC
GAGGGGTGGA AGGAAAGGTC GGTCGACAAT CTGCTTGCCG CGATCGAGGC GAAGCGGCAA
CCCGACGCGG CGCGCCTGCT TTTCGGGCTT GGCATCCGCC ATGTCGGCGC GGTGACCGCC
CGCGACCTGC TGAAGGGCAT TGGCGACATC GCGCGGCTGC CCGGAAAAGC CGCTGAACTC
AGGGCATGGG TCGAAGCCAA TCCGCGCATC GAGGGCGAAT CCGAAGGCAA ATATGCGGCG
CGGCGACTGG AAGCGATCAA GGCGATCCTC GACGTGCGTG CCGACGGCAT CGGCCCCGCG
GTTGCAGAGG CTCTGGGCGA TTTTTTCCAC GAACCGCACA ATCGCGTACT GTGGGACGAT
TTGCTTAGCG AGGTGTCGCC GCCGCCCTAT GTCGTCGAAA CGCGCGACAG CGAAGTGTCG
GGCAAGACCG TCGTATTCAC AGGCAAGCTC GAAACGATGA GCCGCGACGA GGCGAAGGCG
CAGGCCGAAG CGCTCGGCGC GAAAGCCGCG GGCAGCGTCA GCGCCAAGAC CGACCTGGTC
GTCGCCGGCC CCGGCGCGGG GTCGAAACTC AAACAGGCTG CATCGCTCGG CATCCGCGTC
ATCGACGAAG CCGAATGGGC GGCGATCGTC GCGGCGGCGG GCTAA
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| Protein sequence | MKDVGSLTEA EAANELMRLA KQIAHHNKLY HAEDSPEISD ADYDALVRRN TAIEEAFPHL
IRADSPNRLV GAAVEASPLA KVTHAQRMMS LDNAFAAEDV EEFAARVRRF LNLDEGEPLA
FTAEDKIDGL SCSLRYEKGV LVQAATRGDG TVGEDVTPNV RTIADIPQNL KGDIPDIFEI
RGEVYMAKAD FAALNARLLA EADDPDKARQ FANPRNAAAG SLRQKDASVT ASRPLRFLAH
GWGEVSALPA DTQYAVMKAI ESWGVPVSPL LKRCDGVADL LDHYRMIEAE RAELPYDIDG
VVYKVDRLDW QARLGFVARA PRWAIAHKFP AERAQTTLEA IDIQVGRTGK LTPVGRLTPV
TVGGVVVSNV TLHNRDEIAR LGVRPGDRII VQRAGDVIPQ VVENLTRDEP REPYVFPDHC
PVCGSEAVAE DGEVDVRCTG GLICNAQKFE RLRHFVSRGA LDIEGLGEKS IAEFLELGWL
EKGPADIFRL KSHREELLAR EGWKERSVDN LLAAIEAKRQ PDAARLLFGL GIRHVGAVTA
RDLLKGIGDI ARLPGKAAEL RAWVEANPRI EGESEGKYAA RRLEAIKAIL DVRADGIGPA
VAEALGDFFH EPHNRVLWDD LLSEVSPPPY VVETRDSEVS GKTVVFTGKL ETMSRDEAKA
QAEALGAKAA GSVSAKTDLV VAGPGAGSKL KQAASLGIRV IDEAEWAAIV AAAG
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