Gene Sala_0541 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSala_0541 
Symbol 
ID4081431 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingopyxis alaskensis RB2256 
KingdomBacteria 
Replicon accessionNC_008048 
Strand
Start bp554649 
End bp555605 
Gene Length957 bp 
Protein Length318 aa 
Translation table11 
GC content66% 
IMG OID638008899 
ProducttRNA pseudouridine synthase B 
Protein accessionYP_615595 
Protein GI103486034 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0130] Pseudouridine synthase 
TIGRFAM ID[TIGR00431] tRNA pseudouridine 55 synthase 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.578827 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.242004 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACGGCT GGATCATCCT CGACAAACCC GTGGGGCTGG GCTCGACGCA GGCGGTCGGC 
GCGGTCAAGC GCGTGTGCCG CGAGGCGGGG CTGGGCAAGG CCAAGGTCGG CCACGGCGGG
ACGCTCGACC CGCTGGCGTC GGGCGTTCTG CCGATCGCGC TCGGCGAGGC GACAAAGCTC
TGCGGGCGGA TGCTCGATGC CAGCAAGACC TATGATTTTA CAGTGCGGTT TGGGATGGAA
ACCGCGGGGC TCGATGCCGA GGGTGAGGTG GTGGCGACGA GCGACGTGCG GCCGACGCTG
GCGGAGATTG ATGCGGTGTT GCCGCGCTTT ACCGGACCGA TCGAGCAGGT GCCGCCGGCT
TACTCCGCAA TAAAGATCGA TGGCGAGCGG GCGTATGATC GCGCGCGCAA GGGTGAGGCG
GTTGAGATGA AGGCGCGGGG GGTGACCGTC TATTCCCTTC GTCATGCCGG ACTTGATCCG
GCATCTATCG CCGCGGGCGC CGAATGGACC CCGGATCAAG TCCGGGGTGA CGAGGGCGGG
GAGGATCGGC TTGAATCCAT CACACTTACC GCCCATGTTT CCAAGGGCAC ATATATCCGC
TCGCTCGCCC GCGACATCGC GCGCGCGGTC GGCAGCGTCG GCCATGTCAC CATGCTCCGC
CGTACGAAAG CCGGGCCGTT CACGCTCGAA CGCGCGATTT CGCTGGACAA ATTGAACGCT
TTCGGCCAAG GCGCCGCGCA ATCAGAGATT ATTCTGCCGC TCGAGGCAGG GCTGGTCGAC
ATCCCGGCTC TTGACCTTTC CCCGGAAGCG GCAGGGGCGA TCCGCCAGGG TCGCGTCTGG
ACCGGGGTTA GCACGCACGA CGGGCTCTAT TGGGGACGCG ACGCCGAGAA CCGGCCCGTT
GCCTTGATCG AGGCTTTGGC GGGAACGCTG AAGGTAGTGC GGGGCTTCAA CCTGTAA
 
Protein sequence
MNGWIILDKP VGLGSTQAVG AVKRVCREAG LGKAKVGHGG TLDPLASGVL PIALGEATKL 
CGRMLDASKT YDFTVRFGME TAGLDAEGEV VATSDVRPTL AEIDAVLPRF TGPIEQVPPA
YSAIKIDGER AYDRARKGEA VEMKARGVTV YSLRHAGLDP ASIAAGAEWT PDQVRGDEGG
EDRLESITLT AHVSKGTYIR SLARDIARAV GSVGHVTMLR RTKAGPFTLE RAISLDKLNA
FGQGAAQSEI ILPLEAGLVD IPALDLSPEA AGAIRQGRVW TGVSTHDGLY WGRDAENRPV
ALIEALAGTL KVVRGFNL