Gene Sala_0538 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSala_0538 
Symbol 
ID4081428 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingopyxis alaskensis RB2256 
KingdomBacteria 
Replicon accessionNC_008048 
Strand+ 
Start bp553000 
End bp553593 
Gene Length594 bp 
Protein Length197 aa 
Translation table11 
GC content64% 
IMG OID638008896 
Productthymidine kinase 
Protein accessionYP_615592 
Protein GI103486031 
COG category[F] Nucleotide transport and metabolism 
COG ID[COG1435] Thymidine kinase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.113985 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.408144 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCAAGC TCTACTTTTA TTATGCCAGC ATGAACGCCG GCAAATCGAC GACGCTGCTG 
CAGGCGGATT TCAACTATCG CGAGCGCGGC ATGGAAACAA TGCTGTGGAC CGCGGCGCTC 
GACGACCGCT ACGGCACGGG GCAGGTGACG AGCCGGATCG GCTTGATGGC GGCGGCACAC 
AAGTTTGATC CCGAAAGCGA TCTGTTCGCC GCGGTGAGCG CCGAAAATGC GGAACGGCCG 
CTGGCCTGCG TGCTTGTCGA CGAGGCGCAA TTCCTGTCGC GTGAGCAGGT GTTGCAACTG 
GCGCGGCTCG CCGATGAGGT GAATATCCCG GTGCTCTGTT ACGGCCTGCG CACCGATTTC 
GCCGCGAACC TGTTTCCCGG CTCGGCGGCG CTGCTCGGCC TTGCCGACGC GCTCGTCGAA 
CTCAAAGCCG TGTGCGAATG CGGGCGCAAG GCGACGATGA ACCTGCGCGT CGATGAAAAC 
GGCCGCGCGG TGGTCGAAGG CGCGCAGACC GAGATCGGCG GCAACGACCG CTATGTCGCG 
ATGTGTCGGC GGCATTTCAT GGAAAAGCGA CGCGAGGCGG CCGCGGATGC TTGA
 
Protein sequence
MAKLYFYYAS MNAGKSTTLL QADFNYRERG METMLWTAAL DDRYGTGQVT SRIGLMAAAH 
KFDPESDLFA AVSAENAERP LACVLVDEAQ FLSREQVLQL ARLADEVNIP VLCYGLRTDF 
AANLFPGSAA LLGLADALVE LKAVCECGRK ATMNLRVDEN GRAVVEGAQT EIGGNDRYVA 
MCRRHFMEKR REAAADA