| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_0531 |
|---|
| Symbol | |
|---|
| ID | 4081421 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | - |
|---|
| Start bp | 545637 |
|---|
| End bp | 546539 |
|---|
| Gene Length | 903 bp |
|---|
| Protein Length | 300 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 638008889 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_615585 |
|---|
| Protein GI | 103486024 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.490724 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGATCA ATTTTGACGG CCGCGTTGCC ATTGTCACCG GCGCGGGCGG CGGGCTTGGC
CGCGCCTATG CGCTCGAACT CGCGCGGCGC GGCGCCAAGG TCGTGGTCAA CGATCTCGGC
GGTGCGCGCG ACGGCACCGG CCATTCGGAC GCGGCGCTTG CGGTGGTCGA GGAAATCCGC
GCCGCGGGCG GCACCGCCAT GCCCGACGGC GGCAGCGTCA CCGAATATGA ACAGATGGTC
GAAATGGTCG CCAAGGCGAA GGAGGAATGG GGCGGCGTCC ACATCCTGAT CAACAACGCC
GGCATCCTGC GCGACAAGAG CTTTGCCAAG ATGGACCCCG CCGATTTCGA CCTGGTGGTC
AAGGTCCACC TGCTCGGCAG CGCCTATGTC ACCAAGGCGT GCTGGGACAT CATGCGCGAC
CAGGCCTATG GCCGCATCCT GATGACCGCC TCCTCGACCG GCCTTTACGG CAATTTTGGG
CAGGCGAACT ATGGCGCGGC GAAGCTGGGC CTCGCGGGGC TCACCAAGAC GCTCCACCTC
GAAGGCGCGA AATATAATAT CCGCTGCAAC ACGATCGCCC CCGTTGCGGG CACCCGGATG
ACCGAGGATA TTTTCCCCGC CGAACTGTTC GAAAAGTTCA CTCCCGCAAA TGTCGTGCCG
GCCGCGCTCT ATCTCGTCAG CGAGGATGCG CCGACCAACA TGATCATCGG CGCGGGCGCG
GGCGCCTATC ACGCCGCCTA TGTCACCATG ACCCCCGGCG TGGCGCTGCC CGAGGGCGAG
CGCACCCCCG AAGGCGTCGC CGCGGCGTGG GACAAGATCA TCGACCGCAC CGGCGACACC
GTCCCGCAAT CGGGCAGCGA ACAGTCGATG AATGTGATGA GGGCACTGAT GGCGCTGGGG
TGA
|
|---|
| Protein sequence | MTINFDGRVA IVTGAGGGLG RAYALELARR GAKVVVNDLG GARDGTGHSD AALAVVEEIR
AAGGTAMPDG GSVTEYEQMV EMVAKAKEEW GGVHILINNA GILRDKSFAK MDPADFDLVV
KVHLLGSAYV TKACWDIMRD QAYGRILMTA SSTGLYGNFG QANYGAAKLG LAGLTKTLHL
EGAKYNIRCN TIAPVAGTRM TEDIFPAELF EKFTPANVVP AALYLVSEDA PTNMIIGAGA
GAYHAAYVTM TPGVALPEGE RTPEGVAAAW DKIIDRTGDT VPQSGSEQSM NVMRALMALG
|
|---|
| |