| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_0526 |
|---|
| Symbol | |
|---|
| ID | 4081416 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | + |
|---|
| Start bp | 541057 |
|---|
| End bp | 542457 |
|---|
| Gene Length | 1401 bp |
|---|
| Protein Length | 466 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 638008884 |
|---|
| Product | pyruvate dehydrogenase subunit beta |
|---|
| Protein accession | YP_615580 |
|---|
| Protein GI | 103486019 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0022] Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit
[COG0508] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.190561 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCATCG AACTGAAGAT GCCGGCGCTG TCGCCGACGA TGGAAGAGGG CACGCTCGCC
AAGTGGCTCG TCAAGGAAGG CGACATTGTG AAGTCGGGCG ACATCCTCGC CGAAATCGAA
ACCGACAAGG CAACGATGGA GTTTGAAGCG GTCGACGAAG GGACGATCGG CCAGATCCTC
GTTCCCGAAG GCACCGACAA TGTGAAGGTC GGCACCGTGA TCGCGACGAT TCAGGGCGAA
GGGGAGGAAC AAAACGTCGC CCCCGCGCAG GCGGGGGCCG CAAGCAACAG TGAGCCCACG
CCAGCGGCCC CCGCCCCCGC GGGGGCGACG GATGAGCCTG CACCCGCTCC CGCTCCCGTT
GCGGACAGGC CCGCCGCGAC CGAACGCGCT TCCGACCCCG CGATCCCCGA AGGCACCGCG
ATGGTCAAGC TCACCGTCCG CGAAGCGCTG CGCGACGCGA TGGCCGAGGA AATGCGAAGG
GACGACCGCG TCTTTGTGAT GGGCGAGGAA GTCGCCGAAT ATCAGGGCGC GTACAAGGTC
ACGCAGGGGC TGCTCCAGGA GTTTGGCGCG CGGCGCGTGG TCGACACGCC GATCACCGAA
TATGGCTTTG CCGGCCTGGG CGCAGGCGCG GCGATGGGCG GCCTCAGGCC CGTCATCGAG
TTCATGACCT TCAACTTTGC GATGCAGGCG ATCGACCACA TCATCAATTC GGCGGCGAAG
ACCAACTATA TGTCGGGCGG GCAGATGCGC TGCCCGATCG TTTTCCGCGG CCCCAACGGT
GCGGCGGCGC GCGTCGGCGC GCAGCACAGC CAGAATTACG GGCCCTGGTA TGCCAGCGTT
CCCGGCCTGA TCGTCATCGC GCCCTATGAC GCCGCCGACG CCAAGGGGCT GCTGAAGGCG
GCGATCCGCA CCGAAGACCC GGTCGTCTTC CTCGAAAACG AGCTGCTCTA TGGCCGCAGC
TTCGAGGTTC CCGATGTCGA TGATTTCGTG CTGCCGATCG GCAAGGCGCG CGTGATGCGC
GAAGGGCGCG ATGTCACCGT CGTCAGCTAT TCGATCGGCG TCGGCCTGGC GCTCGAGGCG
GCCGACAGCC TTGCGGGCGA GGGGATCGAC GCCGAGGTGA TCGACCTGCG TACGCTGCGC
CCGCTCGACA CCGCGACGGT GCTCGCCAGC CTCAAGAAGA CGAACCGCCT TGTCGTCGTC
GAGGAGGGCT GGCCGGTCTG CTCGATCGCC AGCGAAATCG CGATGGTCGC GATGGAGCAG
GGCTTCGACG ACCTCGACGC GCCCGTGATG CGCGTGTGCA ACGAGGATGT GCCGCTGCCC
TATGCGAACA ACCTGGAGAA GGCCGCGCTG ATCGACACGC CGCGCGTGGT GACGGCGGTG
AAGGCGGTTC TCAATCGTTA A
|
|---|
| Protein sequence | MAIELKMPAL SPTMEEGTLA KWLVKEGDIV KSGDILAEIE TDKATMEFEA VDEGTIGQIL
VPEGTDNVKV GTVIATIQGE GEEQNVAPAQ AGAASNSEPT PAAPAPAGAT DEPAPAPAPV
ADRPAATERA SDPAIPEGTA MVKLTVREAL RDAMAEEMRR DDRVFVMGEE VAEYQGAYKV
TQGLLQEFGA RRVVDTPITE YGFAGLGAGA AMGGLRPVIE FMTFNFAMQA IDHIINSAAK
TNYMSGGQMR CPIVFRGPNG AAARVGAQHS QNYGPWYASV PGLIVIAPYD AADAKGLLKA
AIRTEDPVVF LENELLYGRS FEVPDVDDFV LPIGKARVMR EGRDVTVVSY SIGVGLALEA
ADSLAGEGID AEVIDLRTLR PLDTATVLAS LKKTNRLVVV EEGWPVCSIA SEIAMVAMEQ
GFDDLDAPVM RVCNEDVPLP YANNLEKAAL IDTPRVVTAV KAVLNR
|
|---|
| |