| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_0525 |
|---|
| Symbol | |
|---|
| ID | 4081415 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | + |
|---|
| Start bp | 539985 |
|---|
| End bp | 541055 |
|---|
| Gene Length | 1071 bp |
|---|
| Protein Length | 356 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 638008883 |
|---|
| Product | pyruvate dehydrogenase (lipoamide) |
|---|
| Protein accession | YP_615579 |
|---|
| Protein GI | 103486018 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1071] Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit |
|---|
| TIGRFAM ID | [TIGR03182] pyruvate dehydrogenase E1 component, alpha subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.3038 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGGCCAAAG CACCCGCGCG TAAGACTGCC GCGCCAAAAA AAGTCGCTGC CACCCCAGCT
CCCGCATCCA ATCGCGAAGG GCCGCGCGAT CCGGTCCCCT ATGACGCGAC CCCGCAAGAA
CTCGAAAAAT TCTATCGCGA CATGCTGCTC ATCCGCCGCT TCGAGGAAAA GGCGGGGCAG
CTCTACGGTC TGGGGCTGAT CGGCGGTTTC TGCCACCTCT ATATCGGTCA GGAAGCCGTG
GCGGTCGGCC TGCAATCGGC GCTGGACGGG GACAAGGACA GCGTCATCAC CGGATATCGC
GACCATGGCC ACATGCTCGC CTACGGCATC GACCCCAAGG TCATCATGGC CGAGCTGACC
GGCCGCGCCG CGGGCATTTC GAAGGGCAAG GGCGGCTCGA TGCACATGTT CAGCGTCGAG
CACAAGTTCT ACGGCGGTCA CGGTATCGTC GGCGCGCAGG TCTCGCTCGG CACGGGCCTT
GCCTTCGCGC ACAAATATCG CGGCGACGGC GGTGTGGCGA TGGCCTATTT CGGCGACGGC
GCCGCGAACC AGGGTCAGGT CTACGAAAGC TTCAACATGG CCGAGCTGTG GAAGCTGCCG
ATTATCTTCG TGATCGAGAA CAACCAGTAC GCCATGGGCA CGTCGGTCAA CCGCGCGTCG
GCGGAGGACC AGCTCTATCG CCGCGGCGAA AGTTTCCGCA TTCCGGGGAT GCAGGTCGAC
GGCATGGACG TGCTCGCGGT GCGCGGCGCG GCTGAGGCGG CGCTCGAATG GGTGCGCGCA
GGCAGGGGGC CGGTGCTGAT GGAACTCAAG ACCTATCGCT ACCGCGGACA CTCGATGTCC
GACCCCGCAA AATATCGCAG CCGCGAGGAA GTGCAGGCGG TGCGCGACAA ATCGGACGCG
ATCGAGCATC TGAAAAAGCT GATGGAGGGC GCCGGGATCG GCGAGGACCG GATCAAGGAT
ATCGACAAGG AAATCCGTGC GATCGTCGCC GAATCGGCCG ACTTTGCCGA GAGCGCGCCC
GAACCCGACT TGTCCGAACT CTATACCGAC GTGCTGGTGG AGCAATATTG A
|
|---|
| Protein sequence | MAKAPARKTA APKKVAATPA PASNREGPRD PVPYDATPQE LEKFYRDMLL IRRFEEKAGQ
LYGLGLIGGF CHLYIGQEAV AVGLQSALDG DKDSVITGYR DHGHMLAYGI DPKVIMAELT
GRAAGISKGK GGSMHMFSVE HKFYGGHGIV GAQVSLGTGL AFAHKYRGDG GVAMAYFGDG
AANQGQVYES FNMAELWKLP IIFVIENNQY AMGTSVNRAS AEDQLYRRGE SFRIPGMQVD
GMDVLAVRGA AEAALEWVRA GRGPVLMELK TYRYRGHSMS DPAKYRSREE VQAVRDKSDA
IEHLKKLMEG AGIGEDRIKD IDKEIRAIVA ESADFAESAP EPDLSELYTD VLVEQY
|
|---|
| |