Gene Sala_0473 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSala_0473 
Symbol 
ID4080521 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingopyxis alaskensis RB2256 
KingdomBacteria 
Replicon accessionNC_008048 
Strand
Start bp488139 
End bp489404 
Gene Length1266 bp 
Protein Length421 aa 
Translation table11 
GC content67% 
IMG OID638008831 
Producthypothetical protein 
Protein accessionYP_615527 
Protein GI103485966 
COG category[S] Function unknown 
COG ID[COG2733] Predicted membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.83946 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCAACC TCGCTTCCCG CCGGCCGATT GGCGTCGCCA TCCCGGCAAA GCCCTCCAGC 
ATCCGTATCG TCGCCACCGG GATGCTCGTC GTCATGGCGA TCGTCTTCGT CGGCGCCAAG
ACCTATCAGG ACGCGCATCC GGCGATCGGC TTTGTCCGCG CCTTTGCCGA GGCAGGGCTG
GTCGGCGGGC TGGCCGACTG GTTCGCGGTG ACGGCCTTGT TCCGGCACCC GATGGGGCTG
CCGATTCCGC ACACCGCGAT CATCCCGCGC AACAAGAACC GCATCGGCGA CACGCTCGCG
CGCTTCCTGC TCACCAATTT CCTGCTGCCG CGGCTGATCG CGCGCAAGAT GCAGGCGGTC
GATGTCGCGG GTGCGGTTGG AAAGTTCCTG TCCGAACCCG CCGAGGGCGG CGGGCGGCTG
CGCCTCGGCG CGTCGCGGAT CATCGCTGAC GGGCTGGGCG CGCTCGACCA GCAAAGGCTG
GGCGGCATGG TCAAATCGGC AATCGCCGAC CGTCTGCGCG AACTCGACGT CGCACCGCTA
TTGGGACAGG CGTTGCAGGC GGCGCTTGCC GAGGGGCGCC ACCAGCCGCT CCTCGACGCG
ATGGTCAAAT GGGGGTCGAA GACGCTCGAA CTCAACGAAC ATCTGATCCA CCAGATGGTC
CACGACAACA GCAATGCGAT CGTGCGTTTC ACCGGGCTGG ACGAGAGCAT CTCGAACCGC
ATCGTCGCGG GGCTGTCGAA GCTGCTCAGC GAAATGGCGG TCGACGAGAC ACATCCGCTG
CGCCTCCGCG TCGAGGAGGG GCTCGCCAAG ATGGCGCTCG ACCTGCAGCA CGACCCCGAG
GTGAAGGCCA GGGTCGCGCG CGTGCGCGAC GAGCTGCTCG AAAACAAGGC GGTGAAGCGC
TGGCTCGACG GATTGTGGGA ACAGGGCCGC GCCGCGCTGC TCAAGGCCGC GCGCAACCCC
GACACGATGC TCGCGGGGCG GATCGGCGAG CTGGTGACGC AATTCGGCGC GATGCTGGGG
GAGGATGTGC ATATCAAGCG CACGCTCAAC CGCTATGCGC GGCGCGCGGT GGTCGGCATG
GTCGACAGCT ATGGCGAGGC GGCGCTGAAG CTCGTATCGG ACACGATCCG CGGCTGGGAT
GCCAAGACGA TCACCGACCG GCTGGAAAAT GCGGTCGGCG ACGATCTGCA ATATATCCGC
ATCAACGGCA CGCTCGTTGG GGGGCTGGTG GGGGTGGCGA TCCACACGGT CGATGTGCTG
ATCTAA
 
Protein sequence
MTNLASRRPI GVAIPAKPSS IRIVATGMLV VMAIVFVGAK TYQDAHPAIG FVRAFAEAGL 
VGGLADWFAV TALFRHPMGL PIPHTAIIPR NKNRIGDTLA RFLLTNFLLP RLIARKMQAV
DVAGAVGKFL SEPAEGGGRL RLGASRIIAD GLGALDQQRL GGMVKSAIAD RLRELDVAPL
LGQALQAALA EGRHQPLLDA MVKWGSKTLE LNEHLIHQMV HDNSNAIVRF TGLDESISNR
IVAGLSKLLS EMAVDETHPL RLRVEEGLAK MALDLQHDPE VKARVARVRD ELLENKAVKR
WLDGLWEQGR AALLKAARNP DTMLAGRIGE LVTQFGAMLG EDVHIKRTLN RYARRAVVGM
VDSYGEAALK LVSDTIRGWD AKTITDRLEN AVGDDLQYIR INGTLVGGLV GVAIHTVDVL
I