| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_0440 |
|---|
| Symbol | |
|---|
| ID | 4082987 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | + |
|---|
| Start bp | 449278 |
|---|
| End bp | 450282 |
|---|
| Gene Length | 1005 bp |
|---|
| Protein Length | 334 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 638008797 |
|---|
| Product | phage integrase |
|---|
| Protein accession | YP_615494 |
|---|
| Protein GI | 103485933 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4974] Site-specific recombinase XerD |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGGCGC TTGCTCTCCA TCTCTCGGCA TATCTGCGGG AACATCTGCC GCGCGAACGC
GCCGTCAGCC CGCACACGGT GAAGACCTAT GCCAACTGCT TCGTCCTCCT CGTCCAGTTC
GCTGCCGATC GGCTGAAGCG CCGACCGACC GATCTCGAGG TTGAGGATCT CGGCACAGAC
ATGATCATGG CCTTCCTCGA TCATGTGGAG ATCGGCCGCG GCAGCTGCGT GCGGACCCGC
AATGGCAGGC TCGCCGCGAT CCGATCCTTC TTCCGATACA TCGAGTACCG GATTCCAGCC
TGCCTCGATC AGGCACTCCG TGTCAGAGCA ATCCCGACCA AGAAGACAGA CAAGGCGCTG
ATCGATTACC TCGACCGGGC CGAGATCAAG GCTTTGCTCG ATACACCCGA TCCCCGGACA
CGCCTCGGCA CCCGTGATCG CGCGATGCTG CATCTTACCT ATGCTGGCGG ACTGAGGGTG
TCGGAACTCG TAACGCTGCA ACTGGGCGAT TTCCCGGACC GCTCCCTGTC CACCATGCAC
ATCATGGGCA AAGGGCGACG TGAACGGGTC CTGCCGCTGT GGAAGGAGAC CCAGATCGCA
TTGCGCGCAT GGCTTGCGAT CCGGCCTCAA GTTGAGGTCA CCGAGATTTT CCTCAATGCC
AACGGGCAGC CGATGACCCG CGACGGATTT GCGTTCCGAT TGGCCGAGCA CGTCAAGACG
GCAGCGACGA AGCAGCCGTC GATCCTTGGG AAGCGCGTCA CACCCCACGT GCTTCGTCAT
TCTTGCGCGA TGCACACGCT CGCGGCGACG GGGGACATTC GCAAGGTCGC ATTATGGCTC
GGCCACGCCA GTATCCAGAG CACCGAGACC TACTTGCGCG CCGATCCCGA AGAGAAGCTG
CAGATTCTCG CAGCCCACGG TGCCCCTGCG ATCAAGCCGG GGCGCTTCAA GCCGCCTTCC
GACGCCTTGA TCACAATGCT CACCGACGTT CGAAGGCGGG CCTGA
|
|---|
| Protein sequence | MTALALHLSA YLREHLPRER AVSPHTVKTY ANCFVLLVQF AADRLKRRPT DLEVEDLGTD
MIMAFLDHVE IGRGSCVRTR NGRLAAIRSF FRYIEYRIPA CLDQALRVRA IPTKKTDKAL
IDYLDRAEIK ALLDTPDPRT RLGTRDRAML HLTYAGGLRV SELVTLQLGD FPDRSLSTMH
IMGKGRRERV LPLWKETQIA LRAWLAIRPQ VEVTEIFLNA NGQPMTRDGF AFRLAEHVKT
AATKQPSILG KRVTPHVLRH SCAMHTLAAT GDIRKVALWL GHASIQSTET YLRADPEEKL
QILAAHGAPA IKPGRFKPPS DALITMLTDV RRRA
|
|---|
| |