| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_0437 |
|---|
| Symbol | |
|---|
| ID | 4082984 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | - |
|---|
| Start bp | 444934 |
|---|
| End bp | 446769 |
|---|
| Gene Length | 1836 bp |
|---|
| Protein Length | 611 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 638008794 |
|---|
| Product | putative methylase/helicase |
|---|
| Protein accession | YP_615491 |
|---|
| Protein GI | 103485930 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAAACC GAAGGAAACC TGCGTCTCTC GCCGCCACGC TCGACATAAA CTGCGACTGC
AAAGAATATG TGATCGACTA TCTCGCCAAG AGCTTTCCTG TTCGTCTGAT GGCGGTGTTC
ACCGACGAAA ACGGCAATCC GCGCTCCGAG CCGATGACTG ACGAGGATGG CGCACCTGTG
CTGTGCCGCT CCGCGCTGGC CGCGCGCGAC CGGATGATCG AACAGCTCTG CGCCCTGCCG
CCGATTGCTA CTGCGCTCGA TGCCATCATC GAACGGTTCG GCGTTGACCA GGTGGCGGAA
GTCACCGGTC GCACACGTCG GCTCATCGTC GGCCGCGACG GTCGCCAGAA ACTCCAATCC
CGCTCGCCGC GCGCCAATGT GGCCGAAACC CAGGCCTTTA TGGACGGCGC GAAGCGCATC
CTGGTGTTCT CCGATGCCGG GGGAACGGGG CGCAGCTACC ATGCTGATCT TGCCGCCAGG
AACCAGGCCC GCCGGGTCCA CTTTCTGCTC GAGCCGGGCT GGCGAGCTGA CGCCGCGATC
CAGGGGCTTG GCCGGACCAA TCGCACCAAT CAGGCATCAG CCCCGCTGTT CCGGCCCGTG
ACCACCGATG TGCGCGGCGA GCGGCGGTTC ATTTCGACGA TCGCCCGCCG CCTCGACAGC
TTGGGCGCTC TGACGCGCGG GCAGCGCCAG ACCGGTGGCC AGAACCTCTT CGATCCGGCC
GACAATCTCG AAAGCATCTA CGCCAAGGAG GCGCTCCACC GCTGGTTCGG CCTCTTGTTC
ACAGGCAAGC TCGAAGCCGT CAGCCTCGGG CGCTTTCAGG AGCTGACAGG TCTCCGGATC
GAAGCGCCTG ATGGTTCGAT GGTCGATGAC CTGCCGTCGA TCCAGCGGTG GCTCAACCGC
ATTCTTGCGC TTCCCATCGC CCTGCAGAAC GCGATCTTTG ACGAGTTCAT GGGGCTGGTC
GAAGCGCGCA TCGATGCCGC CCGGCAGGCT GGCACCCTCG ATCTCGGCTT GGAGACCATC
GCGGTTGAGG ACTTCACGGT CCTGTCGGAC ACGCTGCTGC GCACAGATCC AGCATCGGGC
GCGACGACCC ATCTCCTCGA ACTGGAAATC GCCAGGGCCC TGAAGCCGCT CACGCTGACG
CGGCTCGAGG AGATTCACGG CATCACCGGG CAGCGGCAAC GCCCGGTTCG GAACGCCCGC
TCAGGTCGAG TCGCCTTACT GGTGCCCGCC CGAAGTATCC TTGCCGATGA CGGTACGCGC
GTGGCCCGCT TCGAATTGCT TCGCCCGATG AAGCACAGCC ACATCACCGA GGATCAGCTC
GCTGAGAGCA GCTGGGAGGG GATCTCCGTC GACGTTTTCC GCGAGGCCTG GGTCGCCGAG
GTGGAAGAGG CCAGGACCAG CCACAAGCGC GAGCGCCTCT ATCTCGCGAC GGGCCTACTG
CTTCCGGTCT GGGACAAGCT CCCTTCGGAT TTCGTCAGGG TTAGTCGCAT CTCGGCGGCG
GATGGCCGTT CGCTCCTTGG CCGCGAGGTT CCCGCCCATT GTGTGCCCGA ACTGTGCCGA
GCGCTGGGTC TGGAACGCGA GCAAACGCTT TCCGCCGACG ACATTGTCCA GACCGTCCTG
GCAACGGGGA GGGCCATGGA GTTCACGGGC CGCGAGCTGC TCATGGTCAA GCGCAGCCTG
GTCAATGGGT CACAGCGACT TGAGCTTACG GGATGGAGTG CTGCTCGGCT CGACTGGTAC
AAGGCCCAAG GCTGCTTTAC CGAGATCATC CGCTATCAGA CCCGGCTCTT CGTACCGATC
GAGGGCGCGG CGAGTGTGAT TGCCAGACTG GCATGA
|
|---|
| Protein sequence | MENRRKPASL AATLDINCDC KEYVIDYLAK SFPVRLMAVF TDENGNPRSE PMTDEDGAPV
LCRSALAARD RMIEQLCALP PIATALDAII ERFGVDQVAE VTGRTRRLIV GRDGRQKLQS
RSPRANVAET QAFMDGAKRI LVFSDAGGTG RSYHADLAAR NQARRVHFLL EPGWRADAAI
QGLGRTNRTN QASAPLFRPV TTDVRGERRF ISTIARRLDS LGALTRGQRQ TGGQNLFDPA
DNLESIYAKE ALHRWFGLLF TGKLEAVSLG RFQELTGLRI EAPDGSMVDD LPSIQRWLNR
ILALPIALQN AIFDEFMGLV EARIDAARQA GTLDLGLETI AVEDFTVLSD TLLRTDPASG
ATTHLLELEI ARALKPLTLT RLEEIHGITG QRQRPVRNAR SGRVALLVPA RSILADDGTR
VARFELLRPM KHSHITEDQL AESSWEGISV DVFREAWVAE VEEARTSHKR ERLYLATGLL
LPVWDKLPSD FVRVSRISAA DGRSLLGREV PAHCVPELCR ALGLEREQTL SADDIVQTVL
ATGRAMEFTG RELLMVKRSL VNGSQRLELT GWSAARLDWY KAQGCFTEII RYQTRLFVPI
EGAASVIARL A
|
|---|
| |