Gene Sala_0428 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSala_0428 
Symbol 
ID4082380 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingopyxis alaskensis RB2256 
KingdomBacteria 
Replicon accessionNC_008048 
Strand
Start bp433473 
End bp435461 
Gene Length1989 bp 
Protein Length662 aa 
Translation table11 
GC content65% 
IMG OID638008785 
ProductparB-like partition proteins 
Protein accessionYP_615482 
Protein GI103485921 
COG category[K] Transcription 
COG ID[COG1475] Predicted transcriptional regulators 
TIGRFAM ID[TIGR00180] ParB-like partition proteins 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.62662 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.628869 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATCAAGT CGATCCCGCT GAACAAGCTC GTCCAGTCTC CCCGCAATGT TCGCCGTCAC 
AGTGACCCGG CATCAGACGC CGAGCTCAAG GCAAGCATCG CAGCCTGTGG CCTGCTACAG
AACCTCATCG TGAGGCCCAC CGCCAAGGCC AAGTTCGAGG TCGAAGCCGG TGAGAGGCGT
CGGCGCGCAA TGCTCGCGCT TGCAGACGAA AAGATCCTTG CCCGCGATCA CGAAGTCACC
TGCCTCGTGC TCGAAGACAG CGCTGAGGTC GCGGTCGAGA CCAGCCTTGC GGAGAACTTT
CACCGCCTCG CCATGAACCC GGCCGACGAA GCCCAGGCCT TTGCCGCGCT CGTGGCAGGC
GGTGCGACCG TCGAGGACGT CGCGCGCCGC TTCGGTCTGA CCGTTCGCTT CGTTGATGGC
CGGCTGCGTC TCGCGAACCT TGCGCCTGTG GTGTTTGAGG CACTGGCCTC CGGGGAAATC
ACCCTCGATA TCGCCAAGGC CTTCGGCGCG ACCTCGGACC AGGACATCCA GGCCCGGGTG
TTCGAGCAGG TTTCCTCGGC CTACTACGCA CCCAATCCCG ACAGCATCCG GCGCATGGTC
CTCTCCGGCA CAGTCCGGGG CAGCGATCCG CGCGCCCGTC TCGTTGGCCG CGATGCCTAC
ATTGCCGCGG GCGGCCGGAT CGAGCGTGAG CTGTTCGACA ACGACGACAG CGAATCCTGG
GTCGATGTTG CGCTGCTCGA AAGCCTAGCG GCGGCAGAGA TGGAAGAGCA GGCCAAAGCC
CTCGCCACCG AGCAGGGTCT TGCCTGGGTG AAGCCAACGC TTGATCCCTA CGCCAGCCAC
GATCTGGTCG AAGGGCTGGT CCGGCTTCCT GCCGACCCGG CGCCGATGAC CGAAGCCGAA
TTGGCAAGGC TCGACGAACT CGATGCCTCC TATGACGAAC ATGCGGCTAT CCTCGAAGAT
GAGGACAGCG CCGAGGAGGC TGTGGCAGCG GCCGAAGCGG CAATCGAGGC GATCGAACGC
GAGTGTCAGG ACATTCGCGC CCGCCCGCCC GTCATCGCGC CCGAGCTCAA GGCCGAGGCA
GGGATGATCC TGGTGCTCTC GCGTGATGGG ACGCCGGTTC TCCAACCGGT GTTCTACGGC
GAGCGTCAGG CTGATCCCGC GGAAGCTGAC GATGGGATCG AAGTCGTTGC CGGCGATGAA
GGTTCGGACA GGCGCCGGAC GACTTTGTCG AAACGTCTGG TCGACGAACT CGCGATGCAG
CGTCGCGATA TTCTGGCACT TCACGTTGCG TCCGATCCCG GGCTGGCGCT CGACATCATG
GTCTTCACCC TCGCCGATTC CGATACCCAC GATTGGCGGG CGCGCCCTTC GACCACGCTG
CGCGCGCCTG TTCCGGCAGG CCCGATCATC GGCTTCGAAG CCAAGGATGC GCCAGCGAGC
AGCGCGCTTG CCGAGCTCAG GTCCGGTCTC GACGAAAGCT GGCGCGCCGG TGCCAATGCA
ACGTCCCGCT TCGACCTGTT TCGGGCGCTG TCCGATGACA GCCGCGCCGC GTGGCTGGGC
CATGTCGTTG CCCGGTCGCT CGAGGCCAGC CTCAACATGG AAGGTGAGCG TCAGCTGCCA
TTCCAGGATC ATCTCGGCAG CCTGATCGGC ATCGACATGG CGCAGTGGTG GCGTCCGACG
GCGGCCAATT ACTTCGATCG GGTATCGAAG CAGGTGATCC TCGACGCGCT GACCGACGTC
GGCGGTCTCG AGCTCTCCTC CCGCTTTGCC TCGGTCAAGA AGGGTGACCT CGCGATGAGT
GCCGAACGCG TCTTCGCCGG CACTTACATC ACCGAGGTCG AAGTACGCGA GAAGGCCCTG
GCCTGGGTGC CTGAGGTCCT GCGGTTTGCC TCCGCTGCCC CGGAGGCTGG CGAAGCCGAG
ATCGACGCGA CCGACGCTGA CCCCGGTGAC GATACCGAAG ATCAGTCCCC CCGCGAGTTG
GCCGCCTGA
 
Protein sequence
MIKSIPLNKL VQSPRNVRRH SDPASDAELK ASIAACGLLQ NLIVRPTAKA KFEVEAGERR 
RRAMLALADE KILARDHEVT CLVLEDSAEV AVETSLAENF HRLAMNPADE AQAFAALVAG
GATVEDVARR FGLTVRFVDG RLRLANLAPV VFEALASGEI TLDIAKAFGA TSDQDIQARV
FEQVSSAYYA PNPDSIRRMV LSGTVRGSDP RARLVGRDAY IAAGGRIERE LFDNDDSESW
VDVALLESLA AAEMEEQAKA LATEQGLAWV KPTLDPYASH DLVEGLVRLP ADPAPMTEAE
LARLDELDAS YDEHAAILED EDSAEEAVAA AEAAIEAIER ECQDIRARPP VIAPELKAEA
GMILVLSRDG TPVLQPVFYG ERQADPAEAD DGIEVVAGDE GSDRRRTTLS KRLVDELAMQ
RRDILALHVA SDPGLALDIM VFTLADSDTH DWRARPSTTL RAPVPAGPII GFEAKDAPAS
SALAELRSGL DESWRAGANA TSRFDLFRAL SDDSRAAWLG HVVARSLEAS LNMEGERQLP
FQDHLGSLIG IDMAQWWRPT AANYFDRVSK QVILDALTDV GGLELSSRFA SVKKGDLAMS
AERVFAGTYI TEVEVREKAL AWVPEVLRFA SAAPEAGEAE IDATDADPGD DTEDQSPREL
AA