Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sala_0417 |
Symbol | |
ID | 4082369 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingopyxis alaskensis RB2256 |
Kingdom | Bacteria |
Replicon accession | NC_008048 |
Strand | + |
Start bp | 424434 |
End bp | 425963 |
Gene Length | 1530 bp |
Protein Length | 509 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 638008774 |
Product | integrase catalytic subunit |
Protein accession | YP_615471 |
Protein GI | 103485910 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG4584] Transposase and inactivated derivatives |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.328365 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.377294 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGATCGACA TGGACCTACT CAGTGTGATC CGCCGGTGGC ATTTCCGCCA AGGCATGGCC ATTCGTGAGA TCAAGCGGCG GACCGGCTTA TCACGCAACA CGATCCGCAA ATATCTGCGA GCAGACGCGG TAGAGCCGGT GTTTAAGGTT CCCGACCGGC CGAGCAAGCT GGACCCGTTT TCCGAGAAGC TGACAGGTTG GCTGCGCGTG GAGTCGGGCA AATCGCGCAA ACAGAAACGT ACGGCCAAGC AGCTTTACGC TGATCTCGTC ACTTTGGGCT ATGACGGCTC GTATGCTCGC GTGGCGGCCT TTGCCCGCGA TTGGAAGCGC GACCGCCAGT ATGAGCAGCA AACCAGCGGA CGCGGGACCT TCGTGCCGCT GGTTTTCCAG CCTGGCGAAG CCTTCCAGTT CGATTGGAGC GAGGATTACG CCGTGCTGGG TGGCAAGCAG GTCAAGCTGC AGGTGGCCCA TACCAAGCTA TCACACAGCC GGGCCTACAT CGTTCGGGCC TATCTGTTGC AGACGCATGA GATGCTGTTC GACGCCCTGA CGCAGGCATT CCGAGTGCTG GGCGGCATTC CCCAACGCGG GATCTTTGAT AATATGAAGA CGGCGGTCGA CAAGATCGGC CGTGGTAAGG CGCGCCAAGT CAACGCCCGG TTCGCCGCCC TGGCCAGCCA TTATCTATTC GAAACAGACT TCTGCAATCC AGCATCGGGC TGGGAAAAGG GACAGGTCGA GAAGAACGTT CAGGATGCCC GTCACCGTCT GTGGCAGCCC ATGCCCAGCT TCCCAGATCT TGCAGCTCTC AATGCCTGGC TTGAGGAACA ATGTGTCGCG CAGTGGGCAG AAATCCAGCA CGGCACATTA CCTGGCACCA TCGCCGATGT GCACGCCGAA GAGGTAATCA GCTTGATGCC CATGGGGAGG CCCTTCGATG GCTTCGTCGA GCAGACCAAG CGCGTGTCGC CCACCTGCCT AATCGCCTTC GAGCGCAACC GTTACAGTGT GCCAGCCTCC TTTGCCAATC GGCCCGTCAG CCTGAGAGTT TACCCCGAGC GGCTTGTCAT CGTCGCGGAA GGACAAGTCT TGTGCGAACA CGAGCGGATC ATTGACCGGT CCCATCAGAA GCCGGGACGC ACGATCTATG ACTGGCGCCA CTATCTGGCT GTCGTTCAGC GCAAGCCCGG CGCCCTGCGC AATGGTGCGC CATTCCTTGA GATGCCCGAG GCATTCCGCC AGTTGCAGAC CCAACTGCTC AAGCGGCTCG GCGGTGACAA GGAGATGGTT GAGATCCTAT CTCTTGTTTT GCACCATGAT GAGCAGTCCG TTTTATGCGC AGTCGAGTTG GCTCTTGAGG ACGGTGTGCC AACTAAAACT CATGTGCTCA ACGTGCTGCA CCGCCTGATT GACGGCAAGG CGCCACCGGC ACCAACGATC GATGCCCCGC AGGCCCTGCG CCTTAGCACG GAGCCCAAAG CCGATGTAGG CCGCTACGAC ACGCTGAGGG AGCTGCGTCA TGCGTCATGA
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Protein sequence | MIDMDLLSVI RRWHFRQGMA IREIKRRTGL SRNTIRKYLR ADAVEPVFKV PDRPSKLDPF SEKLTGWLRV ESGKSRKQKR TAKQLYADLV TLGYDGSYAR VAAFARDWKR DRQYEQQTSG RGTFVPLVFQ PGEAFQFDWS EDYAVLGGKQ VKLQVAHTKL SHSRAYIVRA YLLQTHEMLF DALTQAFRVL GGIPQRGIFD NMKTAVDKIG RGKARQVNAR FAALASHYLF ETDFCNPASG WEKGQVEKNV QDARHRLWQP MPSFPDLAAL NAWLEEQCVA QWAEIQHGTL PGTIADVHAE EVISLMPMGR PFDGFVEQTK RVSPTCLIAF ERNRYSVPAS FANRPVSLRV YPERLVIVAE GQVLCEHERI IDRSHQKPGR TIYDWRHYLA VVQRKPGALR NGAPFLEMPE AFRQLQTQLL KRLGGDKEMV EILSLVLHHD EQSVLCAVEL ALEDGVPTKT HVLNVLHRLI DGKAPPAPTI DAPQALRLST EPKADVGRYD TLRELRHAS
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