| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_0405 |
|---|
| Symbol | |
|---|
| ID | 4081724 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | - |
|---|
| Start bp | 414851 |
|---|
| End bp | 415291 |
|---|
| Gene Length | 441 bp |
|---|
| Protein Length | 146 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 638008763 |
|---|
| Product | thioredoxin |
|---|
| Protein accession | YP_615460 |
|---|
| Protein GI | 103485899 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG3118] Thioredoxin domain-containing protein |
|---|
| TIGRFAM ID | [TIGR01068] thioredoxin |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 38 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.497639 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAGCCG ACAAGATCAA GGTAGTTTGC CCACATTGTG ATGCGGTCAA CGCTATCCCG
CCTGATCGGC CAGCCCAGGC CGCAAAATGC GGCAAATGCC ACAAGGCGCT GTTCAATGGT
TCGCCCGTCG ACCTGCTGGG CCAGAGGTTC GATCGCCATA TCACACGATC CGACATACCT
GTCGTTGTGG ATTTCTGGGC GACGTGGTGC GGTCCCTGCC GCGCCATGGC TCCATCATTT
GCCCAGGTCA CGATTGCAAT CGAACCGCGC GCCAGGTTCG CAAAGGTCGA TATCGACAAG
GCTCCCGAAC TTGCCGCCCG GTACGGCGTG CAGGGCGTCC CTGCCTTGTT AATATTCAAG
AATGGACGGC TGGTCGATCA ACGATCCGGT GCCTTACCCC CCTCCGCGCT TCGCCAATGG
GTGGAGGCAC ATATTGGCTG A
|
|---|
| Protein sequence | MEADKIKVVC PHCDAVNAIP PDRPAQAAKC GKCHKALFNG SPVDLLGQRF DRHITRSDIP
VVVDFWATWC GPCRAMAPSF AQVTIAIEPR ARFAKVDIDK APELAARYGV QGVPALLIFK
NGRLVDQRSG ALPPSALRQW VEAHIG
|
|---|
| |