Gene Sala_0320 details

Gene Information

• Locus tag: Sala_0320
• ID: 4082351
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Sphingopyxis alaskensis RB2256
• Kingdom: Bacteria
• Replicon accession: NC_008048
• Strand: +
• Start bp: 327984
• End bp: 328361
• Gene Length: 378 bp
• Protein Length: 125 aa
• Translation table: 11
• GC content: 71%
• IMG OID: 638008679
• Product: general secretion pathway protein I
• Protein accession: YP_615376
• Protein GI: 103485815
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG2165] Type II secretory pathway, pseudopilin PulG
• TIGRFAM ID: [TIGR01707] general secretion pathway protein I; [TIGR02532] prepilin-type N-terminal cleavage/methylation domain

Plasmid Coverage information

• Num covering plasmid clones: 21
• Plasmid unclonability p-value: 0.492193
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 15
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

GTGGGCGCTG ACCCGTTGCG CCCCGACGAG CGCGGCTTCA CCCTGCTCGA AATGCTCGTC 
GCCTTGAGCA TCATCAGCAT CGCCGCGCTG ACGCTGGTGC GGCTCGACGC CTATGCGGTG 
CGCACGGCGG GTGACCTCGA TGTCAGCACG GTTGCGGGGA TCGTCGCGCA GAACCGCGCG 
GTCGAGCTGT GGACCGACCC CGCGCCGCCG ACGATCGGCA ACAGCGCGAT CGGCGTCACG 
AACGCCGGGC GCAACTGGCG CATCGACCAG CGCGTGACGA AAACCGCCGA CGCGGCGCTG 
CTGCGTATCG ACCTGCTCGT CCGGCCCGAA AGCGGCAGCG GGCAGGCGGC GCTGACGATC 
ATCCGGCCCG CGCGATGA 

 

Protein sequence

MGADPLRPDE RGFTLLEMLV ALSIISIAAL TLVRLDAYAV RTAGDLDVST VAGIVAQNRA 
VELWTDPAPP TIGNSAIGVT NAGRNWRIDQ RVTKTADAAL LRIDLLVRPE SGSGQAALTI 
IRPAR