| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_0313 |
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| Symbol | |
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| ID | 4082344 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingopyxis alaskensis RB2256 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008048 |
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| Strand | + |
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| Start bp | 318409 |
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| End bp | 321102 |
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| Gene Length | 2694 bp |
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| Protein Length | 897 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 638008672 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_615369 |
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| Protein GI | 103485808 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01782] TonB-dependent receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.552035 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCAAGC GGCCGATCTT CGCCAGCCTG CTCCTCCTTA GCACCGCGCT TGTCGCTCCT
GCCGCGCTTG CGCAGGGCAG CGGCGCCGAT CCGGCGCCGG CCGCCGCCGA CGAGCCCGTC
GCCGACGCGG CCGCGCAGGA CGAGGACGCC GATATTTCGA TTCCGGGCGG CGCCGACGCC
GAGATCGTCG TCACCGGCCG CTTCACGCCC AATGTCGTCC GCGCGACGCC CGAAGTCGTT
TCGGTGCTGT CGTCGGCCGA CATTGCGCGG ACCGGCGAGG GCGACATCGC CGGCTCGCTC
CAGCGCGTGA CCGGCCTGTC GGTCGTCGGC AATGGGTTCG TCTATGTCCG CGGCCTTGGC
GACCGCTATT CGCTGGCGCT GCTCAACGGA TCGCCGCTGC CCAGCCCCGA ACCGCTGAAG
CGCGTCGTTC CGCTCGACCT CTTTCCGTCG AACGTGATCG ATTCGACGCT GGTGCAGAAA
AGCTATTCGG CGAACTTCCC CGGCGAATTC GGCGGCGGCG TGATCAACCT CACGACCAAA
TCGACCCCGC GCGAAACCTT TCTGACCTTC TCGGGCGGCG TCGGCTGGGA CAGCGAGACG
ACGAACGAGC TTGGCTATAC CTATTATGGC AGCGACACCG ACTGGACGGG CTTCGACGAT
GGCACGCGCG ATGTGCCGCC GCTCTTGAAG GCCGCCTTTG CCAGCGGCAA GCCGATCCTC
GAAGGCGCCG ATTTCACGCA GGACGATCTC GAGGCGATCC AGATGGAACT GGTCAACGCC
GAGACGAGCC TGCTCCAGCA GAATGATCAT ATCCCGATCA ACTGGTCGGC GGGGATCACC
GGCGGCACGA CGATCACGCT GCCCAACGGC GAGCTGGGTA TCATCGCCAC CATGGGGATC
AGCAACAAGT GGCGCACGCG CGACACGCTG CAACAAACGT CGCTGAACCA GGATCTCTCG
GGCGATCCGC AGACGAGCTT CAACCGCGTC ATCACCGACA ACCGCATCGT CGTGAACGGG
CTGCTTGGCT TCGGGCTCGA ACTGGGCGAT CACAAGTTCC GCTGGACCAA TTTGTTCATC
CGCGACACGC TGAAGCAGGC GCGCCTCGGC CTCGGCGTCG ATCGCAACCA GTCCGAACGC
GACATTCTGG AGCAGGACAC GGCGTGGTAC GAGCGTCAGC TCATCAACAC GCAGCTGGTG
GCCGAGTTCG ATTTCGACCG GTTGCAGCTC GACCTGCGCG GCGGTTACGC CAATTCGCAG
CGCGAGGCGC CCTATGAGCG CGGCTTCACC TATGTCCGCA CCAACCTGCC GACCGAACAG
GATCCGACGG GCGACAAGTT CGTCAACGAC CTCGGCGGCA ACCGCGGCGA TGCGACGATC
GCCTTTTCGG ACCTCACCGA AAATCTGTGG TCGGGCGGTG TCGATCTGTC CTATGAAGTG
GCGCCGCGTA TCACCGCGAC GATCGGCTAT GCCTATAGCG ACACCAGCCG CACCGCCGTG
CGCCGCGCCT TCCAGTTCCG CGGATCGAAC CTGCCCGTCG AGGTCACGCA ACTGCGCCCC
GACTATCTCC TCTCCGACGC GACGATCCAG CTCTATGACA TCTCGCTGCT CGAAACCTCG
GCGCAGGACG GCACCGCCGC CTTCGATGCG GCGCTGACGA CGCACGCGGG CTATGGCCAG
GTGCAGGCCG AGATCATTCC GGGGGTCAAC ATCAACGCGG GCGTCCGGTA CGAGGATGCC
AGGCAGACGG TGCGCCCGAT CGACCTGTTC AACACGGGCA GCAGCGCGAT CGTCGCGACA
AACCTCAACA ATGATTATTG GCTCCCCGCG GTCACGCTGA CCTGGGAAGT CGCGCCCGAC
ATGCAGCTGC GCATCAACGG GTCGAAGACG ATCGCCCGCC CGCAGTTCCG CGAGCTGATC
GCCCAAGTCT ATCAGGATCC CGAATCGAAC CGCGAGTTCC GCGGCAACCC GTCGCTGACC
GACAGCGAGC TGTGGAATGC CGAGGTGCGG TACGAATGGT ATTTCGATCG CGACCAGCGC
TTCACGCTGG CCGGTTTCTA CAAGTCGATC GACCGACCGA TCGAAACCTT CACCTCGATC
AGCACCGACT CGGTCGCCAA CTCCAGTTTC GCCAACGCGC CGAAGGCGAC CCTCTATGGC
GCCGAGGTCG AGGTGCAGAA ATATGTCCCG CTCGATACGC TGTCCGACGC GCCCTTCTGG
CAGAGCCGCC GCCTCGTGCT CATCGGCAAC TACACCTATA CCAAGTCGGA AATTAAGGTC
GGCGACGACG ATACGACGGT GATCAACGGC GTGACGCTGA GCGCCGCCGA CTTCTTCTTC
GACGGCTCGC CGCTGACCGG CCAGTCGGAT CATATCGTCA ATTTCCAGAT CGGGATCGAG
GATCAGGACA AATTGTCGCA ACAAACGCTG CTTTTCACCT ATGCCAGCCC GCGCGTCACC
AGCCGCGGTC CGTCACAGCA GCCCGATATT CGCGAAAAAC CGGGCATTTC GGTCGATTTC
GTGGCGCGGC AGGGCGTGAC CCTGCTCAAC AAGGACATCG AACTGAAGTT CGAGGCGCGC
AACCTGACCG GGCGCACCTA TAAGGAAGTG CAGGAAGCGG GCGACAACCG CATCTTCCTC
AACCGCTACA AGCTGGGGCG GACTTTCTCG CTCAGCGCGT CGCTGAAGTT CTGA
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| Protein sequence | MTKRPIFASL LLLSTALVAP AALAQGSGAD PAPAAADEPV ADAAAQDEDA DISIPGGADA
EIVVTGRFTP NVVRATPEVV SVLSSADIAR TGEGDIAGSL QRVTGLSVVG NGFVYVRGLG
DRYSLALLNG SPLPSPEPLK RVVPLDLFPS NVIDSTLVQK SYSANFPGEF GGGVINLTTK
STPRETFLTF SGGVGWDSET TNELGYTYYG SDTDWTGFDD GTRDVPPLLK AAFASGKPIL
EGADFTQDDL EAIQMELVNA ETSLLQQNDH IPINWSAGIT GGTTITLPNG ELGIIATMGI
SNKWRTRDTL QQTSLNQDLS GDPQTSFNRV ITDNRIVVNG LLGFGLELGD HKFRWTNLFI
RDTLKQARLG LGVDRNQSER DILEQDTAWY ERQLINTQLV AEFDFDRLQL DLRGGYANSQ
REAPYERGFT YVRTNLPTEQ DPTGDKFVND LGGNRGDATI AFSDLTENLW SGGVDLSYEV
APRITATIGY AYSDTSRTAV RRAFQFRGSN LPVEVTQLRP DYLLSDATIQ LYDISLLETS
AQDGTAAFDA ALTTHAGYGQ VQAEIIPGVN INAGVRYEDA RQTVRPIDLF NTGSSAIVAT
NLNNDYWLPA VTLTWEVAPD MQLRINGSKT IARPQFRELI AQVYQDPESN REFRGNPSLT
DSELWNAEVR YEWYFDRDQR FTLAGFYKSI DRPIETFTSI STDSVANSSF ANAPKATLYG
AEVEVQKYVP LDTLSDAPFW QSRRLVLIGN YTYTKSEIKV GDDDTTVING VTLSAADFFF
DGSPLTGQSD HIVNFQIGIE DQDKLSQQTL LFTYASPRVT SRGPSQQPDI REKPGISVDF
VARQGVTLLN KDIELKFEAR NLTGRTYKEV QEAGDNRIFL NRYKLGRTFS LSASLKF
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