| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_0305 |
|---|
| Symbol | |
|---|
| ID | 4082868 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | + |
|---|
| Start bp | 306935 |
|---|
| End bp | 309295 |
|---|
| Gene Length | 2361 bp |
|---|
| Protein Length | 786 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 638008663 |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_615361 |
|---|
| Protein GI | 103485800 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.301005 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTGAAGA CCACCCACCT GTTGTCGTCG ATTGCGCTTT TCGCGCTGCC GATGGCCGCG
CACGCTCAGG AAGCGCCTCT CGACGATGCG GCGCCCGCTG ACGAGGAAAT CGTCGTCACC
GGCACCGCCG GCGGCGGCAT CAGCCGTCAG GACGCGGCGT TCGCGATCAC CAGCATCAAT
GCCGAGGCGA TCGAGCGCGC GGCGCCGAAC AGCACCGCCG ACCTGTTCAA GGTCATCCCC
GGTGTGTCGG CCGAAAGTTC GGGCGGCCAG AATGGCGCCA ACATCTTCGT GCGCGGCTAT
CCGTCGGGCG GCGACGCCGA GTTCGTCACG CTGACGGTGC AGGGCGTGCC CTTTTTCTCG
CCGCCGACCT TGTCCTTCCT CGAAAACACG CAGCTGATCC GCATCGACGA GACGATCGAG
CGCGTCGAGG CTGTGCGCGG CGGCACCGGC GCATTGTTCG GTAACGGCCA GCCCGGCCTG
ACCGTCAACT TCGTCCAGAA AGAGGGCGGG CGCGATTTCG AGGGGCTCGT GAAAGCCAGC
ATCACCGATT TTGGCGACCT GCGCGGCGAC ATGCTGCTGT CAGGGCCGCT CGGCGAGTCG
ACCAGCTTCA TGATCGGCGG CTATTATGCG AGCGGCAACG GCATCCGCGA CCCGCGCTTC
ACCGCCGAAA AGGGTGGACA GATCACCGCC AATGTCCGGC ACGACATGGA CCGCGGCTCG
ATCCTCGTCT TTGCGCGCTA CCTCAACGAT CGCGGCCAGT GGCTGCTGCC GATCCCGGTG
GTGCGCGACG GCGACAAGGT GCGCCAGTTC GGCAATATCG ACCCCGGCAC CGGCGTGCTT
GCGGGGCCTG AAACGCGATT GAGCCTGCTG CCCGACGGGA CGCGCGCCGA CCTCGCCGAC
GGGCGCGGCG CCGACCTTGT CAACCTTGGC ACCAATTTCG ATTATGAGAT CGGCGACGGG
CTGCAATTGC GCTACCGCGC GAGCTACCTC AAGGGCGACG CCGACACGAC GGGTCTCGTG
CCCGCGAGCA CCGCGACCAG CGCCGATGCC TATGCCGCCT CGCTCGGCAG CACGATCGGC
AGCCTCACCT ATGTCAACGG TGGGCAGGCG GTCGCGGGCA GCCAGCCGGT GATCCGCGCG
GGCACCTGGA TCGTGCGCAA GCAGATCGAG GATTTCACCA ACGACCTTGC GGTCGAATGG
GACAGCGGCA ACAACAAGTT CACCGTCGGC GCCTATTATT CGGACTTCTC GTCGAACGAC
CAGTGGAACC TCGGCAACGT CCAGCTGCTC ACCGCCGAAA CGAACGCGCG CCTTCTGAAC
CTCGTGCTCG CCAACGGACA GGTCGCGACC GACCGCGGCT TCACACAGGG AAGCTTTTTC
AACGTCAACG CCGCCTATGA CGGGCGCGAA TATGCCTTTT ATGCGGTCGA CGAGTTTCAG
GTGACGCCCG AGCTGCGGCT CGACGCGGGC ATCCGTTACC AGCATTACAA GGCGAGCGGG
ACGCTGGAGA ACAATGATTT TGGCGTGAAT GTCGATGGCG ATCCCGACAC GCTCTACGAC
AATGGCACCG CGGTGCTCAA CGGCACCTTC CGCAATATCG CGTACAAGAA GGGCTCATGG
TCGTGGACGG TCGGCGCCAA TTACGACATC TCCTCGTCGG TTGGCGTCTA TGCGCGTTAC
AATCGCGGCA ACACCAACCC CTTCTTCGAC AATCTGCGCG ACGGGATTTT CGTGTCGCCG
CGCGTCGACA ATTATGAAGG CGGGGTGAAA GTGCGCACCG ATCTGCTCTC GCTCTATGCC
ACCCTGTTTC ACACGCGATT CCGCGGGCTG GCGACGACTG TGATCACCAA TGGCGCGCCG
ATCGCGTCGA TCGGGGGGGC ACGCAGCACC GGGGTCGAGA TCGAAGGACA GATTCGCCCG
ATCGACAATG TCTCGATCGC CTTTTCGGGC ACCTGGCTCG ATGCGAAATA TCGGAACTTC
TTCGCCGATG GCGGGGCGAC CGACCTGTCG GGCAACCGGG TGCAACGCCA GCCGAAGTGG
CAGTGGCGCG TGACCCCGGC CTATGACATT CCCTTCGGCA ACGACGGCAA GGTCTCGCTC
TATTCGACCT TCACCTATGT CGGCGACCGT TTCTCCGACA CCGCGAACAC CCAGTCGCTG
CCCAATTATT TCAAGATCGA CGCCGGGATC AGCGTCGATG TGAACCAGGC GCTCAGCTTT
GCGGTGACCG CGGACAATCT GACCGACAAG GTCGGGCTGA CCGAAGGCGA TCCGCGCCAG
CTCGGCGCCG GCAGCCAGGT CGTCAACGCG CGGCCGATCC TTGGCCGCTC GTTCCGCTTC
AGCGCGGCGT ACAGGTTCTG A
|
|---|
| Protein sequence | MLKTTHLLSS IALFALPMAA HAQEAPLDDA APADEEIVVT GTAGGGISRQ DAAFAITSIN
AEAIERAAPN STADLFKVIP GVSAESSGGQ NGANIFVRGY PSGGDAEFVT LTVQGVPFFS
PPTLSFLENT QLIRIDETIE RVEAVRGGTG ALFGNGQPGL TVNFVQKEGG RDFEGLVKAS
ITDFGDLRGD MLLSGPLGES TSFMIGGYYA SGNGIRDPRF TAEKGGQITA NVRHDMDRGS
ILVFARYLND RGQWLLPIPV VRDGDKVRQF GNIDPGTGVL AGPETRLSLL PDGTRADLAD
GRGADLVNLG TNFDYEIGDG LQLRYRASYL KGDADTTGLV PASTATSADA YAASLGSTIG
SLTYVNGGQA VAGSQPVIRA GTWIVRKQIE DFTNDLAVEW DSGNNKFTVG AYYSDFSSND
QWNLGNVQLL TAETNARLLN LVLANGQVAT DRGFTQGSFF NVNAAYDGRE YAFYAVDEFQ
VTPELRLDAG IRYQHYKASG TLENNDFGVN VDGDPDTLYD NGTAVLNGTF RNIAYKKGSW
SWTVGANYDI SSSVGVYARY NRGNTNPFFD NLRDGIFVSP RVDNYEGGVK VRTDLLSLYA
TLFHTRFRGL ATTVITNGAP IASIGGARST GVEIEGQIRP IDNVSIAFSG TWLDAKYRNF
FADGGATDLS GNRVQRQPKW QWRVTPAYDI PFGNDGKVSL YSTFTYVGDR FSDTANTQSL
PNYFKIDAGI SVDVNQALSF AVTADNLTDK VGLTEGDPRQ LGAGSQVVNA RPILGRSFRF
SAAYRF
|
|---|
| |