| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_0290 |
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| Symbol | |
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| ID | 4082650 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingopyxis alaskensis RB2256 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008048 |
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| Strand | + |
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| Start bp | 287765 |
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| End bp | 289417 |
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| Gene Length | 1653 bp |
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| Protein Length | 550 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 638008648 |
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| Product | ATP-dependent DNA ligase |
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| Protein accession | YP_615346 |
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| Protein GI | 103485785 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1793] ATP-dependent DNA ligase |
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| TIGRFAM ID | [TIGR00574] DNA ligase I, ATP-dependent (dnl1) |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.664954 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAAGGCGC TTGCCGCCCT GATCGACCGG CTGATCTACA CGCGCTCGCG CAACAGCAAG
CTGGCGCTGA TTGCCGATTA TCTGAGGTGC ACGCCCGACC CCGATCGTGG CTGGGCGATC
GCGGCGCTGA CCGAGAGCCT CGACTTTCCG GCGGTGAAGG CGGGGATGGT GCGTGCATTG
CTGGCGACGC GGGTCGATGA GCAATTGTTC CGGCTGTCGC GCCATTTTGT GGGCGACACG
GCCGAGACGG CAGCGCTGCT GTGGCCTGAA CCTTTTCAGC CCTCCCCTTC AGGGGAGGGG
CTGGGGGTGG GGGCCATCGG CCTTGCACAA GGTGTCGAGC CCCCACCCCA AACCCCTCCC
CTGAAGGGGA GGGGCTTAAC TGTCACCCAA GCCGTCGACG CGCTGGCGGC GGCAAGCCGC
AGCGATGCGC CCGCTATCCT CGCCGATCTG CTCGACCGGC TCGACGCCGA TGGGCGTTAT
GCGCTGCTCA AGCTCGCGCT CGGCGGGATG CGCGTCGGCG TGTCGGCGCG GCTCGCCAAA
CAGGCGTTTG CGCAGGCCTT CGACGTGCCT GTCGACGATG TCGAGGAGCT GTGGCACGCG
ATCCCGCCGC CCTATGCGCC ACTCTTTGCA TGGGGCGAGG GGCGCGCTGA GCGCCCCGAC
CTTGCCGATG TCGCCTTTTT CCGCCCCTTC ATGCTCGCGC ATCCGCTGGA GGAGGAAAGC
GTCGATCTTG CCGACTATGC CGCCGAATGG AAATGGGACG GCATCCGCGT CCAGATCGTG
CGCGGCGGCG GCGAAACGCG CATCTACAGC CGCGGCGGTG AGGAAATCGG CGCCGCTTTC
CCCGAACTGA TCGCGGCGTT CGATCAGGAT GCGGTGATCG ATGGCGAATT GCTCGTGCGT
GGCGAGGTGC AGGGCGGGGA AGCGGCAAGC TTCAACGCGT TGCAACAACG CCTCGGCCGC
AAGACCGTTT CGAAGAAGAT GCTCGCCGAC TATCCGGCCT TCGTGCGCGT CTATGACCTG
TTGGCGGTTG ATGGCGACGA CCTGCGCCCT CTGCCATGGA CCGAACGACG GCGGCGGCTG
GAGGCGTTCG TGCCGCGCCT CGCCAGCAGC CATTTCGACC TGTCGCAACT GATCGAGGCG
GCCGATTTCG ACGACCTCGC CGAACGCCGC GCGGGCGCGC GCGATGCCGC GATCGAGGGG
GTGATGCTCA AGCGCCGCGA CGCACCCTAT GTCGCGGGCC GCCGCGCGGG ACTCTGGTAT
AAATGGAAAC GCGACCCGCT CACCGCCGAT TGCGTGATGA TGTATGCGCA GCGCGGTAAC
GGGCGGCGCG CGAGCTTCTA TTCGGACTAT ACCTTCGGCT GCTGGTCCGA CGCGGGCGAA
TTGCTGCCGG TGGGCAAGGC CTATTCGGGC TTTACCGACG AAGAGCTGAA ATGGCTCGAC
AAGTTCGTGC GCGAACACAC GCTGAACCGT TTCGGGCCGG TGCGCGAAGT CGAAAAGTCG
CTCGTGCTCG AAGTCGCCTT CGATTCGATC CACAGCAGCA AGCGCCACAA ATCAGGGCTC
GCCATGCGTT TCCCGCGCAT TTCGCGCATC CGCCGCGACA AGCCCGCGGA AGAGGCCGAC
CGGATCGCGA CCTTGCGGGC GATGGTGACC TGA
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| Protein sequence | MKALAALIDR LIYTRSRNSK LALIADYLRC TPDPDRGWAI AALTESLDFP AVKAGMVRAL
LATRVDEQLF RLSRHFVGDT AETAALLWPE PFQPSPSGEG LGVGAIGLAQ GVEPPPQTPP
LKGRGLTVTQ AVDALAAASR SDAPAILADL LDRLDADGRY ALLKLALGGM RVGVSARLAK
QAFAQAFDVP VDDVEELWHA IPPPYAPLFA WGEGRAERPD LADVAFFRPF MLAHPLEEES
VDLADYAAEW KWDGIRVQIV RGGGETRIYS RGGEEIGAAF PELIAAFDQD AVIDGELLVR
GEVQGGEAAS FNALQQRLGR KTVSKKMLAD YPAFVRVYDL LAVDGDDLRP LPWTERRRRL
EAFVPRLASS HFDLSQLIEA ADFDDLAERR AGARDAAIEG VMLKRRDAPY VAGRRAGLWY
KWKRDPLTAD CVMMYAQRGN GRRASFYSDY TFGCWSDAGE LLPVGKAYSG FTDEELKWLD
KFVREHTLNR FGPVREVEKS LVLEVAFDSI HSSKRHKSGL AMRFPRISRI RRDKPAEEAD
RIATLRAMVT
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