| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_0238 |
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| Symbol | |
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| ID | 4083097 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingopyxis alaskensis RB2256 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008048 |
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| Strand | - |
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| Start bp | 243964 |
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| End bp | 245190 |
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| Gene Length | 1227 bp |
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| Protein Length | 408 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 638008597 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_615295 |
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| Protein GI | 103485734 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.146038 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGGCC CCGACCTGCC CCGCCCGGTC GAACGGATCG GCGCGCGCAC GACGCTGCAA
AAGCTGCTGT CGCGCTTCCA TTTCGGCATC ACCCTGTTCG CGGTCGCGCT GTCGGGGCTG
ACGATCCTGC TCGCCGGCGT CACGGCGCTG CGCGGCTATG CCGACCGCAA CATGGAACTC
GCGGCGCAGC TTGGCGCCTA TGGCGTCGAA CCCGCGCTGG TCTTCAACGA CCCCGTCGCC
GCGCGCGAAG GGATCGAGCC GCTGACGCGC ATTCCCGGCA TCACGCGGCT GCGCGTCATC
GACGATGTCG GCAGACCAGT CATCGAATGG AAATCGCCTG CCGGAGATCC GGCGCCGCTG
CTCAGCCGCA CCTTCTTCCC GCGCCCCTTT GCGGTCACTG TCCGGCGCAA CGGATCGGCG
ATCGGCACGG TCGAGGTCTG GGGCGACAGT TCGACCCTGA TCGACTATGT GCGGCTCGGC
CTGCTCGCCG GACTGGCCTG CCTCCTCGTC ACCGCATTGG GGACGATCTT CCTCGCCCGC
CGGTTCGAAT ATGAACTGGT CAAGCCGCTG AACGAGATCG CGACGGTCGC GCACGACGTG
CGCCTCCACC GCCGCTTCGA CAAGCGCGTG AAGCCGCTCG GCATTGCCGA ACTCGACCGG
CTCGGCGGCG ACATCAATGC GCTGCTCGAC GAGCTTCAGG GCTGGCAGGG GCATATGGAA
AGCGAACGCG CGCTGCTCGC GCACCGCGCG TCGCACGACA CGCTGACCGC GCTGCCCAAC
CGTGCGGCTT TCGACGAACA GCTTGCGCTG CGGATCGCTG CGGCAAAGGC GCGCGATGGC
CGGTTCGCGC TGCTGTTCAT CGATGCCGAC AATTTCAAGG CGGCGAACGA CAATTTCGGC
CATGCCGCAG GCGACGCCGT GCTTGTCGCG ATATCGGCCT GCATCCGGAA TACGCTGCGT
AAGGATGATT TCGCCGCGCG GATCGGCGGC GACGAGTTCG TCGTCATCAT CGATCCCTTC
GACGTCGGCG TCGTCCCGGC CGATCTGGCG AACCGCCTGC GCGCCTGCAT TGCCGACCCC
ATCACCCTGC CCGACGGCGA ATCCTATCGT GCGTCGGTCA GCGTCGGCGT CGCGGTCTTT
CCCGACGATG GCGGCGACGC CACCGCGCTG CTCACCGCCG CCGATGCGGC GATGTATAGC
GAAAAGATGA CTCATCGTTC CCGATAG
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| Protein sequence | MSGPDLPRPV ERIGARTTLQ KLLSRFHFGI TLFAVALSGL TILLAGVTAL RGYADRNMEL
AAQLGAYGVE PALVFNDPVA AREGIEPLTR IPGITRLRVI DDVGRPVIEW KSPAGDPAPL
LSRTFFPRPF AVTVRRNGSA IGTVEVWGDS STLIDYVRLG LLAGLACLLV TALGTIFLAR
RFEYELVKPL NEIATVAHDV RLHRRFDKRV KPLGIAELDR LGGDINALLD ELQGWQGHME
SERALLAHRA SHDTLTALPN RAAFDEQLAL RIAAAKARDG RFALLFIDAD NFKAANDNFG
HAAGDAVLVA ISACIRNTLR KDDFAARIGG DEFVVIIDPF DVGVVPADLA NRLRACIADP
ITLPDGESYR ASVSVGVAVF PDDGGDATAL LTAADAAMYS EKMTHRSR
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