Gene Sala_0235 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSala_0235 
Symbol 
ID4083015 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingopyxis alaskensis RB2256 
KingdomBacteria 
Replicon accessionNC_008048 
Strand
Start bp241747 
End bp242472 
Gene Length726 bp 
Protein Length241 aa 
Translation table11 
GC content65% 
IMG OID638008594 
ProductMIP family channel protein 
Protein accessionYP_615292 
Protein GI103485731 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0580] Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) 
TIGRFAM ID[TIGR00861] MIP family channel proteins 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.425993 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGAATA TCCAAAAGGG TTTGGCCGAG TTCATCGGCA CATTCTGGCT CGTGTTCGGC 
GGCTGCGGCA GCGCGGTGCT CGCGGCGGGT TTCCCCGACG TCGGGATCGG CCTGCTCGGC
GTGTCGCTCG CTTTTGGCCT GACCGTGATC ACGATGGCCT ATGCGATCGG CCATATTTCA
GGATGCCACC TCAACCCCGC GGTGACGGTC GGGCTGTGGG CCGGCGGGCG CTTCGGGGCG
CGCGACATTC CGCTCTATGT CGTTGCGCAG CTGCTGGGCG CGATCGTCGC CGCCTTCCTG
CTCTTTTATA TCGCGAGTGG CAGTCCGACC TATGACCTTG CCACCAACGG CCTCGCCGCC
AACGGCTTCG GCGAAGGATC GCCCGGCGGT TATGACATCT GGTCGGCGCT GCTGATCGAG
ATCGTGCTGA CGGCCTTCTT CCTGTGGATC ATCATGGGGT CGACCGACGG GCGCGCGCCC
GCCGGTTTTG CGCCGATCGC GATCGGCCTT GCGCTGACGC TGATCCATCT GATTTCGATC
CCGGTCACCA ATACCTCGGT CAATCCGGCA CGCAGCACCG GCCCGGCGCT CGTCGTCGGC
GGGCTCGCGA TCCAGCAGCT CTGGCTGTTC TGGGTCGCGC CGATCGTCGG CGGGATTATC
GGCGGCGTGC TTTACAAGAC GCTGGGCGCC GACAGCTTCC CGAAACCGAA TATCGAGGGC
GAATGA
 
Protein sequence
MTNIQKGLAE FIGTFWLVFG GCGSAVLAAG FPDVGIGLLG VSLAFGLTVI TMAYAIGHIS 
GCHLNPAVTV GLWAGGRFGA RDIPLYVVAQ LLGAIVAAFL LFYIASGSPT YDLATNGLAA
NGFGEGSPGG YDIWSALLIE IVLTAFFLWI IMGSTDGRAP AGFAPIAIGL ALTLIHLISI
PVTNTSVNPA RSTGPALVVG GLAIQQLWLF WVAPIVGGII GGVLYKTLGA DSFPKPNIEG
E