Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sala_0235 |
Symbol | |
ID | 4083015 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingopyxis alaskensis RB2256 |
Kingdom | Bacteria |
Replicon accession | NC_008048 |
Strand | + |
Start bp | 241747 |
End bp | 242472 |
Gene Length | 726 bp |
Protein Length | 241 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 638008594 |
Product | MIP family channel protein |
Protein accession | YP_615292 |
Protein GI | 103485731 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0580] Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) |
TIGRFAM ID | [TIGR00861] MIP family channel proteins |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 0.425993 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACGAATA TCCAAAAGGG TTTGGCCGAG TTCATCGGCA CATTCTGGCT CGTGTTCGGC GGCTGCGGCA GCGCGGTGCT CGCGGCGGGT TTCCCCGACG TCGGGATCGG CCTGCTCGGC GTGTCGCTCG CTTTTGGCCT GACCGTGATC ACGATGGCCT ATGCGATCGG CCATATTTCA GGATGCCACC TCAACCCCGC GGTGACGGTC GGGCTGTGGG CCGGCGGGCG CTTCGGGGCG CGCGACATTC CGCTCTATGT CGTTGCGCAG CTGCTGGGCG CGATCGTCGC CGCCTTCCTG CTCTTTTATA TCGCGAGTGG CAGTCCGACC TATGACCTTG CCACCAACGG CCTCGCCGCC AACGGCTTCG GCGAAGGATC GCCCGGCGGT TATGACATCT GGTCGGCGCT GCTGATCGAG ATCGTGCTGA CGGCCTTCTT CCTGTGGATC ATCATGGGGT CGACCGACGG GCGCGCGCCC GCCGGTTTTG CGCCGATCGC GATCGGCCTT GCGCTGACGC TGATCCATCT GATTTCGATC CCGGTCACCA ATACCTCGGT CAATCCGGCA CGCAGCACCG GCCCGGCGCT CGTCGTCGGC GGGCTCGCGA TCCAGCAGCT CTGGCTGTTC TGGGTCGCGC CGATCGTCGG CGGGATTATC GGCGGCGTGC TTTACAAGAC GCTGGGCGCC GACAGCTTCC CGAAACCGAA TATCGAGGGC GAATGA
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Protein sequence | MTNIQKGLAE FIGTFWLVFG GCGSAVLAAG FPDVGIGLLG VSLAFGLTVI TMAYAIGHIS GCHLNPAVTV GLWAGGRFGA RDIPLYVVAQ LLGAIVAAFL LFYIASGSPT YDLATNGLAA NGFGEGSPGG YDIWSALLIE IVLTAFFLWI IMGSTDGRAP AGFAPIAIGL ALTLIHLISI PVTNTSVNPA RSTGPALVVG GLAIQQLWLF WVAPIVGGII GGVLYKTLGA DSFPKPNIEG E
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