| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_0166 |
|---|
| Symbol | |
|---|
| ID | 4082924 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | + |
|---|
| Start bp | 166953 |
|---|
| End bp | 167456 |
|---|
| Gene Length | 504 bp |
|---|
| Protein Length | 167 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 638008525 |
|---|
| Product | alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen |
|---|
| Protein accession | YP_615223 |
|---|
| Protein GI | 103485662 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0678] Peroxiredoxin |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.566279 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.318936 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGAGCGAAA AGGATGCCAA GATGACGATC CAACCCGGCG ACAAGCTGCC CGACGCGACC
TTCGTAAAGG TGACCGAAAA TGGTCCCGAA CAGGTCAGCG CCGCCGATTA TTTCAAGGGC
CGCAGGGTCG CGCTCTTTTC GGTTCCCGGC GCTTTCACGC CGACCTGCTC GGCCAAGCAT
CTGCCCGGCT TTGTCGAAAA AGCCGACGCC TTGAAGGCCA AGGGTGTCGA TGAAATCGCC
TGCACCGCGG TCAACGACGC CTTTGTCATG GGCGCATGGA GCAAGAGCGC CAACGCCGGC
GATGCGGTCA CGATGCTCGC CGACGGCAAT GGCGCCTTTG CCGAAGCGGT GGGCCTCACC
ATGGACGGCA CTGCTTTCGG CATGGGCAAG CGCGGCCAGC GTTTCTCGAT GATCATCAAC
GACGGCGTCG TCGAACAGCT GAATGTCGAA GCGCCGGGCG AGTTCAAGGT GTCGAGCGCC
GATCATATGC TGGAACAGCT GTAA
|
|---|
| Protein sequence | MSEKDAKMTI QPGDKLPDAT FVKVTENGPE QVSAADYFKG RRVALFSVPG AFTPTCSAKH
LPGFVEKADA LKAKGVDEIA CTAVNDAFVM GAWSKSANAG DAVTMLADGN GAFAEAVGLT
MDGTAFGMGK RGQRFSMIIN DGVVEQLNVE APGEFKVSSA DHMLEQL
|
|---|
| |