| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_0089 |
|---|
| Symbol | |
|---|
| ID | 4082064 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | + |
|---|
| Start bp | 93158 |
|---|
| End bp | 93844 |
|---|
| Gene Length | 687 bp |
|---|
| Protein Length | 228 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 638008450 |
|---|
| Product | ribose 5-phosphate isomerase |
|---|
| Protein accession | YP_615148 |
|---|
| Protein GI | 103485587 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0120] Ribose 5-phosphate isomerase |
|---|
| TIGRFAM ID | [TIGR00021] ribose 5-phosphate isomerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.0309119 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCAACT TCGTCGCTGA GAAATCGATC GCGGCGGTGA GAGCAGTCGA TGAGGTTCGC
GATGGCATGC TTGTCGGGTT AGGGACCGGA AGCACCGCCG CTTATGCCGT GAAAAGCCTC
AGCGAGCGCA TCAAGCACGG CCTTCGCATC ACCGCGGTCG CCACATCCCA AGCGACCGAA
GCTCTAGCTC TCCGTCTTGC GGTGCCGCTT GTTCCCTTTC AACAGCTTAG CGCTGTCGAC
CTGACGATCG ACGGCGCCGA TGAAATCGAT GACCGCTTCC AAGCCATCAA AGGGGGAGGC
GGCGCCCTGC TTCGCGAGAA AATCACCGAG TCCGCATCCA CGCGCGTGAT CATCATCGCC
GATTCCAGCA AGCTTGTTGC GCAGCTCGGC AAATTCCCTC TGCCCGTGGA GGTGGTTCCT
TTCGCCACCG AGTTTGTTCG TGCACGCCTG TCCGCACTCG GAGCCCGTGT TACTGTTCGC
GAAGCGGGTG GGACGCCCTT CCTCACGGAC CAGGGCAATT ACATCCTGGA CGCAGCTTTG
GATGAGATAC CAAGGCCGCG CGAGATCGCC GCCGCGATCA CCACAATCCC GGGCGTCCTG
GAGCATGGAC TGTTCTTGGA TGAAATCGAT ACAATCATGA TTGCGCGCGG TGACATGGTG
GAGGTGCGAC ACCGGGGTGA AGCTTGA
|
|---|
| Protein sequence | MSNFVAEKSI AAVRAVDEVR DGMLVGLGTG STAAYAVKSL SERIKHGLRI TAVATSQATE
ALALRLAVPL VPFQQLSAVD LTIDGADEID DRFQAIKGGG GALLREKITE SASTRVIIIA
DSSKLVAQLG KFPLPVEVVP FATEFVRARL SALGARVTVR EAGGTPFLTD QGNYILDAAL
DEIPRPREIA AAITTIPGVL EHGLFLDEID TIMIARGDMV EVRHRGEA
|
|---|
| |